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Items: 13


Systematic classification of the His-Me finger superfamily.

Jablonska J, Matelska D, Steczkiewicz K, Ginalski K.

Nucleic Acids Res. 2017 Nov 16;45(20):11479-11494. doi: 10.1093/nar/gkx924.


Classification of the treble clef zinc finger: noteworthy lessons for structure and function evolution.

Kaur G, Subramanian S.

Sci Rep. 2016 Aug 26;6:32070. doi: 10.1038/srep32070.


Classification of proteins with shared motifs and internal repeats in the ECOD database.

Schaeffer RD, Kinch LN, Liao Y, Grishin NV.

Protein Sci. 2016 Jul;25(7):1188-203. doi: 10.1002/pro.2893. Epub 2016 Feb 21. Review.


Structural determinants of Smad function in TGF-β signaling.

Macias MJ, Martin-Malpartida P, Massagué J.

Trends Biochem Sci. 2015 Jun;40(6):296-308. doi: 10.1016/j.tibs.2015.03.012. Epub 2015 Apr 29. Review.


ECOD: an evolutionary classification of protein domains.

Cheng H, Schaeffer RD, Liao Y, Kinch LN, Pei J, Shi S, Kim BH, Grishin NV.

PLoS Comput Biol. 2014 Dec 4;10(12):e1003926. doi: 10.1371/journal.pcbi.1003926. eCollection 2014 Dec.


Structural, functional and evolutionary relationships between homing endonucleases and proteins from their host organisms.

Taylor GK, Stoddard BL.

Nucleic Acids Res. 2012 Jul;40(12):5189-200. doi: 10.1093/nar/gks226. Epub 2012 Mar 9. Review.


Homing endonucleases: from microbial genetic invaders to reagents for targeted DNA modification.

Stoddard BL.

Structure. 2011 Jan 12;19(1):7-15. doi: 10.1016/j.str.2010.12.003. Review.


The structure of a bacterial DUF199/WhiA protein: domestication of an invasive endonuclease.

Kaiser BK, Clifton MC, Shen BW, Stoddard BL.

Structure. 2009 Oct 14;17(10):1368-76. doi: 10.1016/j.str.2009.08.008.


ProSMoS server: a pattern-based search using interaction matrix representation of protein structures.

Shi S, Chitturi B, Grishin NV.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W526-31. doi: 10.1093/nar/gkp316. Epub 2009 May 6.


HorA web server to infer homology between proteins using sequence and structural similarity.

Kim BH, Cheng H, Grishin NV.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W532-8. doi: 10.1093/nar/gkp328. Epub 2009 May 5.


The animal in the genome: comparative genomics and evolution.

Copley RR.

Philos Trans R Soc Lond B Biol Sci. 2008 Apr 27;363(1496):1453-61. doi: 10.1098/rstb.2007.2235. Review.


Structural classification of zinc fingers: survey and summary.

Krishna SS, Majumdar I, Grishin NV.

Nucleic Acids Res. 2003 Jan 15;31(2):532-50.


Treble clef finger--a functionally diverse zinc-binding structural motif.

Grishin NV.

Nucleic Acids Res. 2001 Apr 15;29(8):1703-14.

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