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Items: 1 to 20 of 82

1.

High-frequency, low-coverage "false positives" mutations may be true in GS Junior sequencing studies.

Yang Z, Sun G.

Sci Rep. 2017 Oct 23;7(1):13751. doi: 10.1038/s41598-017-13116-6.

2.
3.

Generic Amplicon Deep Sequencing to Determine Ilarvirus Species Diversity in Australian Prunus.

Kinoti WM, Constable FE, Nancarrow N, Plummer KM, Rodoni B.

Front Microbiol. 2017 Jun 30;8:1219. doi: 10.3389/fmicb.2017.01219. eCollection 2017.

4.

A high-throughput assay for quantitative measurement of PCR errors.

Shagin DA, Shagina IA, Zaretsky AR, Barsova EV, Kelmanson IV, Lukyanov S, Chudakov DM, Shugay M.

Sci Rep. 2017 Jun 2;7(1):2718. doi: 10.1038/s41598-017-02727-8.

5.

Multi-template polymerase chain reaction.

Kalle E, Kubista M, Rensing C.

Biomol Detect Quantif. 2014 Dec 4;2:11-29. eCollection 2014 Dec. Review.

6.

Uncovering Trophic Interactions in Arthropod Predators through DNA Shotgun-Sequencing of Gut Contents.

Paula DP, Linard B, Crampton-Platt A, Srivathsan A, Timmermans MJ, Sujii ER, Pires CS, Souza LM, Andow DA, Vogler AP.

PLoS One. 2016 Sep 13;11(9):e0161841. doi: 10.1371/journal.pone.0161841. eCollection 2016.

7.

DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses.

Zepeda-Mendoza ML, Bohmann K, Carmona Baez A, Gilbert MT.

BMC Res Notes. 2016 May 3;9:255. doi: 10.1186/s13104-016-2064-9.

8.

Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas.

Porter TM, Shokralla S, Baird D, Golding GB, Hajibabaei M.

PLoS One. 2016 Jan 5;11(1):e0142759. doi: 10.1371/journal.pone.0142759. eCollection 2016.

9.

Primer and platform effects on 16S rRNA tag sequencing.

Tremblay J, Singh K, Fern A, Kirton ES, He S, Woyke T, Lee J, Chen F, Dangl JL, Tringe SG.

Front Microbiol. 2015 Aug 4;6:771. doi: 10.3389/fmicb.2015.00771. eCollection 2015.

10.

ClickSeq: Fragmentation-Free Next-Generation Sequencing via Click Ligation of Adaptors to Stochastically Terminated 3'-Azido cDNAs.

Routh A, Head SR, Ordoukhanian P, Johnson JE.

J Mol Biol. 2015 Aug 14;427(16):2610-6. doi: 10.1016/j.jmb.2015.06.011. Epub 2015 Jun 24.

11.

Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis.

Wu L, Wen C, Qin Y, Yin H, Tu Q, Van Nostrand JD, Yuan T, Yuan M, Deng Y, Zhou J.

BMC Microbiol. 2015 Jun 19;15:125. doi: 10.1186/s12866-015-0450-4.

12.

Hypothesis: Artifacts, Including Spurious Chimeric RNAs with a Short Homologous Sequence, Caused by Consecutive Reverse Transcriptions and Endogenous Random Primers.

Peng Z, Yuan C, Zellmer L, Liu S, Xu N, Liao DJ.

J Cancer. 2015 May 1;6(6):555-67. doi: 10.7150/jca.11997. eCollection 2015. Review.

13.

Characterizing the diversity of active bacteria in soil by comprehensive stable isotope probing of DNA and RNA with H218 O.

Rettedal EA, Brözel VS.

Microbiologyopen. 2015 Feb 4. doi: 10.1002/mbo3.230. [Epub ahead of print]

14.

High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats.

Zhou J, He Z, Yang Y, Deng Y, Tringe SG, Alvarez-Cohen L.

MBio. 2015 Jan 27;6(1). pii: e02288-14. doi: 10.1128/mBio.02288-14. Review.

15.

High temporal and spatial diversity in marine RNA viruses implies that they have an important role in mortality and structuring plankton communities.

Gustavsen JA, Winget DM, Tian X, Suttle CA.

Front Microbiol. 2014 Dec 15;5:703. doi: 10.3389/fmicb.2014.00703. eCollection 2014.

16.

BAsE-Seq: a method for obtaining long viral haplotypes from short sequence reads.

Hong LZ, Hong S, Wong HT, Aw PP, Cheng Y, Wilm A, de Sessions PF, Lim SG, Nagarajan N, Hibberd ML, Quake SR, Burkholder WF.

Genome Biol. 2014;15(11):517.

17.

ITS polymorphisms shed light on hybrid evolution in apomictic plants: a case study on the Ranunculus auricomus complex.

Hodač L, Scheben AP, Hojsgaard D, Paun O, Hörandl E.

PLoS One. 2014 Jul 25;9(7):e103003. doi: 10.1371/journal.pone.0103003. eCollection 2014.

18.

Reticulate evolution in North American black-fruited hawthorns (Crataegus section Douglasia; Rosaceae): evidence from nuclear ITS2 and plastid sequences.

Zarrei M, Stefanović S, Dickinson TA.

Ann Bot. 2014 Aug;114(2):253-69. doi: 10.1093/aob/mcu116. Epub 2014 Jul 1.

19.

DNA sequencing diagnosis of off-season spirochetemia with low bacterial density in Borrelia burgdorferi and Borrelia miyamotoi infections.

Lee SH, Vigliotti JS, Vigliotti VS, Jones W, Moorcroft TA, Lantsman K.

Int J Mol Sci. 2014 Jun 25;15(7):11364-86. doi: 10.3390/ijms150711364.

20.

Technicalities and Glitches of Terminal Restriction Fragment Length Polymorphism (T-RFLP).

Prakash O, Pandey PK, Kulkarni GJ, Mahale KN, Shouche YS.

Indian J Microbiol. 2014 Sep;54(3):255-61. doi: 10.1007/s12088-014-0461-0. Epub 2014 Mar 9. Review.

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