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Items: 1 to 20 of 28

1.

Ribosome Mechanics Informs about Mechanism.

Zimmermann MT, Jia K, Jernigan RL.

J Mol Biol. 2016 Feb 27;428(5 Pt A):802-810. doi: 10.1016/j.jmb.2015.12.003. Epub 2015 Dec 11. Review.

2.

Ribosome. The structure of the human mitochondrial ribosome.

Amunts A, Brown A, Toots J, Scheres SHW, Ramakrishnan V.

Science. 2015 Apr 3;348(6230):95-98. doi: 10.1126/science.aaa1193. Epub 2015 Apr 2.

3.

Probing the stabilizing effects of modified nucleotides in the bacterial decoding region of 16S ribosomal RNA.

Mahto SK, Chow CS.

Bioorg Med Chem. 2013 May 15;21(10):2720-6. doi: 10.1016/j.bmc.2013.03.010. Epub 2013 Mar 21.

4.

Real-time evidence for EF-G-induced dynamics of helix 44 in 16S rRNA.

Tanner DR, Hedrick EG, Hill WE.

J Mol Biol. 2012 Sep 7;422(1):45-57. doi: 10.1016/j.jmb.2012.05.012. Epub 2012 May 23.

5.

Computational studies of molecular machines: the ribosome.

Sanbonmatsu KY.

Curr Opin Struct Biol. 2012 Apr;22(2):168-74. doi: 10.1016/j.sbi.2012.01.008. Epub 2012 Feb 13. Review.

6.
7.

Elongation in translation as a dynamic interaction among the ribosome, tRNA, and elongation factors EF-G and EF-Tu.

Agirrezabala X, Frank J.

Q Rev Biophys. 2009 Aug;42(3):159-200. doi: 10.1017/S0033583509990060. Review.

8.
9.

The ribosome structure controls and directs mRNA entry, translocation and exit dynamics.

Kurkcuoglu O, Doruker P, Sen TZ, Kloczkowski A, Jernigan RL.

Phys Biol. 2008 Nov 24;5(4):046005. doi: 10.1088/1478-3975/5/4/046005.

10.

Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome.

Agirrezabala X, Lei J, Brunelle JL, Ortiz-Meoz RF, Green R, Frank J.

Mol Cell. 2008 Oct 24;32(2):190-7. doi: 10.1016/j.molcel.2008.10.001.

11.

Predicting ribosomal frameshifting efficiency.

Cao S, Chen SJ.

Phys Biol. 2008 Mar 11;5(1):016002. doi: 10.1088/1478-3975/5/1/016002.

12.

Identification and role of functionally important motifs in the 970 loop of Escherichia coli 16S ribosomal RNA.

Saraiya AA, Lamichhane TN, Chow CS, SantaLucia J Jr, Cunningham PR.

J Mol Biol. 2008 Feb 22;376(3):645-57. doi: 10.1016/j.jmb.2007.11.102. Epub 2007 Dec 7.

13.

The process of mRNA-tRNA translocation.

Frank J, Gao H, Sengupta J, Gao N, Taylor DJ.

Proc Natl Acad Sci U S A. 2007 Dec 11;104(50):19671-8. Epub 2007 Nov 14.

14.

Structural aspects of RbfA action during small ribosomal subunit assembly.

Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, Sharma MR, Booth TM, Takemoto C, Fucini P, Yokoyama S, Agrawal RK.

Mol Cell. 2007 Nov 9;28(3):434-45.

15.

Structures of modified eEF2 80S ribosome complexes reveal the role of GTP hydrolysis in translocation.

Taylor DJ, Nilsson J, Merrill AR, Andersen GR, Nissen P, Frank J.

EMBO J. 2007 May 2;26(9):2421-31. Epub 2007 Apr 19.

16.

Characterization of GE82832, a peptide inhibitor of translocation interacting with bacterial 30S ribosomal subunits.

Brandi L, Fabbretti A, Di Stefano M, Lazzarini A, Abbondi M, Gualerzi CO.

RNA. 2006 Jul;12(7):1262-70. Epub 2006 May 12.

18.

Simulating movement of tRNA into the ribosome during decoding.

Sanbonmatsu KY, Joseph S, Tung CS.

Proc Natl Acad Sci U S A. 2005 Nov 1;102(44):15854-9. Epub 2005 Oct 25.

19.

Exploring global motions and correlations in the ribosome.

Trylska J, Tozzini V, McCammon JA.

Biophys J. 2005 Sep;89(3):1455-63. Epub 2005 Jun 10.

20.

A functional relationship between helix 1 and the 900 tetraloop of 16S ribosomal RNA within the bacterial ribosome.

Bélanger F, Théberge-Julien G, Cunningham PR, Brakier-Gingras L.

RNA. 2005 Jun;11(6):906-13. Epub 2005 May 4.

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