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Items: 1 to 20 of 142

1.

Implication of the box C/D snoRNP assembly factor Rsa1p in U3 snoRNP assembly.

Rothé B, Manival X, Rolland N, Charron C, Senty-Ségault V, Branlant C, Charpentier B.

Nucleic Acids Res. 2017 May 13. doi: 10.1093/nar/gkx424. [Epub ahead of print]

2.

Molecular architecture of the 90S small subunit pre-ribosome.

Sun Q, Zhu X, Qi J, An W, Lan P, Tan D, Chen R, Wang B, Zheng S, Zhang C, Chen X, Zhang W, Chen J, Dong MQ, Ye K.

Elife. 2017 Feb 28;6. pii: e22086. doi: 10.7554/eLife.22086. Erratum in: Elife. 2017 Jun 26;6:.

3.

SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification.

de Araujo Oliveira JV, Costa F, Backofen R, Stadler PF, Machado Telles Walter ME, Hertel J.

BMC Bioinformatics. 2016 Dec 15;17(Suppl 18):464. doi: 10.1186/s12859-016-1345-6.

4.

High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq.

Gumienny R, Jedlinski DJ, Schmidt A, Gypas F, Martin G, Vina-Vilaseca A, Zavolan M.

Nucleic Acids Res. 2017 Mar 17;45(5):2341-2353. doi: 10.1093/nar/gkw1321.

5.

Phylogenetic distribution of plant snoRNA families.

Patra Bhattacharya D, Canzler S, Kehr S, Hertel J, Grosse I, Stadler PF.

BMC Genomics. 2016 Nov 24;17(1):969.

6.

Box C/D guide RNAs recognize a maximum of 10 nt of substrates.

Yang Z, Lin J, Ye K.

Proc Natl Acad Sci U S A. 2016 Sep 27;113(39):10878-83. doi: 10.1073/pnas.1604872113. Epub 2016 Sep 13.

7.

Mutations in SNORD118 cause the cerebral microangiopathy leukoencephalopathy with calcifications and cysts.

Jenkinson EM, Rodero MP, Kasher PR, Uggenti C, Oojageer A, Goosey LC, Rose Y, Kershaw CJ, Urquhart JE, Williams SG, Bhaskar SS, O'Sullivan J, Baerlocher GM, Haubitz M, Aubert G, Barañano KW, Barnicoat AJ, Battini R, Berger A, Blair EM, Brunstrom-Hernandez JE, Buckard JA, Cassiman DM, Caumes R, Cordelli DM, De Waele LM, Fay AJ, Ferreira P, Fletcher NA, Fryer AE, Goel H, Hemingway CA, Henneke M, Hughes I, Jefferson RJ, Kumar R, Lagae L, Landrieu PG, Lourenço CM, Malpas TJ, Mehta SG, Metz I, Naidu S, Õunap K, Panzer A, Prabhakar P, Quaghebeur G, Schiffmann R, Sherr EH, Sinnathuray KR, Soh C, Stewart HS, Stone J, Van Esch H, Van Mol CE, Vanderver A, Wakeling EL, Whitney A, Pavitt GD, Griffiths-Jones S, Rice GI, Revy P, van der Knaap MS, Livingston JH, O'Keefe RT, Crow YJ.

Nat Genet. 2016 Oct;48(10):1185-92. doi: 10.1038/ng.3661. Epub 2016 Aug 29.

8.

Box C/D sRNA stem ends act as stabilizing anchors for box C/D di-sRNPs.

Yip WS, Shigematsu H, Taylor DW, Baserga SJ.

Nucleic Acids Res. 2016 Oct 14;44(18):8976-8989. Epub 2016 Jun 24.

9.

Integrative structural analysis of the UTPB complex, an early assembly factor for eukaryotic small ribosomal subunits.

Zhang C, Sun Q, Chen R, Chen X, Lin J, Ye K.

Nucleic Acids Res. 2016 Sep 6;44(15):7475-86. doi: 10.1093/nar/gkw562. Epub 2016 Jun 21.

10.

Stepwise and dynamic assembly of the earliest precursors of small ribosomal subunits in yeast.

Zhang L, Wu C, Cai G, Chen S, Ye K.

Genes Dev. 2016 Mar 15;30(6):718-32. doi: 10.1101/gad.274688.115.

11.

Conserved structure of Snu13 from the highly reduced spliceosome of Cyanidioschyzon merolae.

Black CS, Garside EL, MacMillan AM, Rader SD.

Protein Sci. 2016 Apr;25(4):911-6. doi: 10.1002/pro.2894. Epub 2016 Feb 25.

12.

C/D box sRNA-guided 2'-O-methylation patterns of archaeal rRNA molecules.

Dennis PP, Tripp V, Lui L, Lowe T, Randau L.

BMC Genomics. 2015 Aug 22;16:632. doi: 10.1186/s12864-015-1839-z.

13.

NUFIP and the HSP90/R2TP chaperone bind the SMN complex and facilitate assembly of U4-specific proteins.

Bizarro J, Dodré M, Huttin A, Charpentier B, Schlotter F, Branlant C, Verheggen C, Massenet S, Bertrand E.

Nucleic Acids Res. 2015 Oct 15;43(18):8973-89. doi: 10.1093/nar/gkv809. Epub 2015 Aug 14.

14.

Proteomic and 3D structure analyses highlight the C/D box snoRNP assembly mechanism and its control.

Bizarro J, Charron C, Boulon S, Westman B, Pradet-Balade B, Vandermoere F, Chagot ME, Hallais M, Ahmad Y, Leonhardt H, Lamond A, Manival X, Branlant C, Charpentier B, Verheggen C, Bertrand E.

J Cell Biol. 2014 Nov 24;207(4):463-80. doi: 10.1083/jcb.201404160. Epub 2014 Nov 17.

15.

Small RNAs with big implications: new insights into H/ACA snoRNA function and their role in human disease.

McMahon M, Contreras A, Ruggero D.

Wiley Interdiscip Rev RNA. 2015 Mar-Apr;6(2):173-89. doi: 10.1002/wrna.1266. Epub 2014 Oct 31. Review.

16.

Protein Hit1, a novel box C/D snoRNP assembly factor, controls cellular concentration of the scaffolding protein Rsa1 by direct interaction.

Rothé B, Saliou JM, Quinternet M, Back R, Tiotiu D, Jacquemin C, Loegler C, Schlotter F, Peña V, Eckert K, Moréra S, Dorsselaer AV, Branlant C, Massenet S, Sanglier-Cianférani S, Manival X, Charpentier B.

Nucleic Acids Res. 2014;42(16):10731-47. doi: 10.1093/nar/gku612. Epub 2014 Aug 28.

17.

Identification of discrete classes of small nucleolar RNA featuring different ends and RNA binding protein dependency.

Deschamps-Francoeur G, Garneau D, Dupuis-Sandoval F, Roy A, Frappier M, Catala M, Couture S, Barbe-Marcoux M, Abou-Elela S, Scott MS.

Nucleic Acids Res. 2014 Sep;42(15):10073-85. doi: 10.1093/nar/gku664. Epub 2014 Jul 29.

18.

Interaction between ribosome assembly factors Krr1 and Faf1 is essential for formation of small ribosomal subunit in yeast.

Zheng S, Lan P, Liu X, Ye K.

J Biol Chem. 2014 Aug 15;289(33):22692-703. doi: 10.1074/jbc.M114.584490. Epub 2014 Jul 2.

19.

Structure of a rare non-standard sequence k-turn bound by L7Ae protein.

Huang L, Lilley DM.

Nucleic Acids Res. 2014 Apr;42(7):4734-40. doi: 10.1093/nar/gku087. Epub 2014 Jan 29.

20.

Structure of Utp21 tandem WD domain provides insight into the organization of the UTPB complex involved in ribosome synthesis.

Zhang C, Lin J, Liu W, Chen X, Chen R, Ye K.

PLoS One. 2014 Jan 21;9(1):e86540. doi: 10.1371/journal.pone.0086540. eCollection 2014.

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