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Items: 1 to 20 of 29

1.

Data to knowledge: how to get meaning from your result.

Berman HM, Gabanyi MJ, Groom CR, Johnson JE, Murshudov GN, Nicholls RA, Reddy V, Schwede T, Zimmerman MD, Westbrook J, Minor W.

IUCrJ. 2015 Jan 1;2(Pt 1):45-58. doi: 10.1107/S2052252514023306. eCollection 2015 Jan 1. Review.

2.

Dynamic and geometric analyses of Nudaurelia capensis ω virus maturation reveal the energy landscape of particle transitions.

Tang J, Kearney BM, Wang Q, Doerschuk PC, Baker TS, Johnson JE.

J Mol Recognit. 2014 Apr;27(4):230-7. doi: 10.1002/jmr.2354.

3.

Virus assembly and maturation: auto-regulation through allosteric molecular switches.

Domitrovic T, Movahed N, Bothner B, Matsui T, Wang Q, Doerschuk PC, Johnson JE.

J Mol Biol. 2013 May 13;425(9):1488-96. doi: 10.1016/j.jmb.2013.02.021. Epub 2013 Feb 26. Review.

4.

Confessions of an icosahedral virus crystallographer.

Johnson JE.

Microscopy (Oxf). 2013 Feb;62(1):69-79. doi: 10.1093/jmicro/dfs097. Epub 2013 Jan 4. Review.

5.

Dissecting quasi-equivalence in nonenveloped viruses: membrane disruption is promoted by lytic peptides released from subunit pentamers, not hexamers.

Domitrovic T, Matsui T, Johnson JE.

J Virol. 2012 Sep;86(18):9976-82. doi: 10.1128/JVI.01089-12. Epub 2012 Jul 3.

6.

Virus maturation.

Veesler D, Johnson JE.

Annu Rev Biophys. 2012;41:473-96. doi: 10.1146/annurev-biophys-042910-155407. Epub 2012 Feb 23. Review.

7.

Host RNAs, including transposons, are encapsidated by a eukaryotic single-stranded RNA virus.

Routh A, Domitrovic T, Johnson JE.

Proc Natl Acad Sci U S A. 2012 Feb 7;109(6):1907-12. doi: 10.1073/pnas.1116168109. Epub 2012 Jan 24.

8.

Structural basis for broad detection of genogroup II noroviruses by a monoclonal antibody that binds to a site occluded in the viral particle.

Hansman GS, Taylor DW, McLellan JS, Smith TJ, Georgiev I, Tame JR, Park SY, Yamazaki M, Gondaira F, Miki M, Katayama K, Murata K, Kwong PD.

J Virol. 2012 Apr;86(7):3635-46. doi: 10.1128/JVI.06868-11. Epub 2012 Jan 25.

9.

All-atom multiscale simulation of cowpea chlorotic mottle virus capsid swelling.

Miao Y, Johnson JE, Ortoleva PJ.

J Phys Chem B. 2010 Sep 2;114(34):11181-95. doi: 10.1021/jp102314e.

10.

Subunits fold at position-dependent rates during maturation of a eukaryotic RNA virus.

Matsui T, Lander GC, Khayat R, Johnson JE.

Proc Natl Acad Sci U S A. 2010 Aug 10;107(32):14111-5. doi: 10.1073/pnas.1004221107. Epub 2010 Jul 26.

11.

Balanced electrostatic and structural forces guide the large conformational change associated with maturation of T = 4 virus.

Matsui T, Tsuruta H, Johnson JE.

Biophys J. 2010 Apr 7;98(7):1337-43. doi: 10.1016/j.bpj.2009.12.4283.

12.

Dynamics and stability in maturation of a T=4 virus.

Tang J, Lee KK, Bothner B, Baker TS, Yeager M, Johnson JE.

J Mol Biol. 2009 Sep 25;392(3):803-12. doi: 10.1016/j.jmb.2009.07.038. Epub 2009 Jul 20.

13.

Autoproteolytic activity derived from the infectious bursal disease virus capsid protein.

Irigoyen N, Garriga D, Navarro A, Verdaguer N, Rodríguez JF, Castón JR.

J Biol Chem. 2009 Mar 20;284(12):8064-72. doi: 10.1074/jbc.M808942200. Epub 2009 Jan 14.

14.

Characterization of large conformational changes and autoproteolysis in the maturation of a T=4 virus capsid.

Matsui T, Lander G, Johnson JE.

J Virol. 2009 Jan;83(2):1126-34. doi: 10.1128/JVI.01859-08. Epub 2008 Nov 5.

15.

Unfolding thermodynamics of the Delta-domain in the prohead I subunit of phage HK97: determination by factor analysis of Raman spectra.

Nemecek D, Overman SA, Hendrix RW, Thomas GJ Jr.

J Mol Biol. 2009 Jan 16;385(2):628-41. doi: 10.1016/j.jmb.2008.10.046. Epub 2008 Nov 1.

16.

Virus capsid expansion driven by the capture of mobile surface loops.

Lee KK, Gan L, Tsuruta H, Moyer C, Conway JF, Duda RL, Hendrix RW, Steven AC, Johnson JE.

Structure. 2008 Oct 8;16(10):1491-502. doi: 10.1016/j.str.2008.06.014.

17.

Molecular dynamics/order parameter extrapolation for bionanosystem simulations.

Miao Y, Ortoleva PJ.

J Comput Chem. 2009 Feb;30(3):423-37. doi: 10.1002/jcc.21071.

18.

Multi-disciplinary studies of viruses: the role of structure in shaping the questions and answers.

Johnson JE.

J Struct Biol. 2008 Sep;163(3):246-53. doi: 10.1016/j.jsb.2008.03.013. Epub 2008 Apr 6. Review.

19.

Structure of antibody-neutralized murine norovirus and unexpected differences from viruslike particles.

Katpally U, Wobus CE, Dryden K, Virgin HW 4th, Smith TJ.

J Virol. 2008 Mar;82(5):2079-88. Epub 2007 Dec 19.

20.

Infectious bursal disease virus capsid assembly and maturation by structural rearrangements of a transient molecular switch.

Luque D, Saugar I, Rodríguez JF, Verdaguer N, Garriga D, Martín CS, Velázquez-Muriel JA, Trus BL, Carrascosa JL, Castón JR.

J Virol. 2007 Jul;81(13):6869-78. Epub 2007 Apr 18.

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