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Items: 1 to 20 of 39

1.

Sensitive Next-Generation Sequencing Method Reveals Deep Genetic Diversity of HIV-1 in the Democratic Republic of the Congo.

Rodgers MA, Wilkinson E, Vallari A, McArthur C, Sthreshley L, Brennan CA, Cloherty G, de Oliveira T.

J Virol. 2017 Feb 28;91(6). pii: e01841-16. doi: 10.1128/JVI.01841-16. Print 2017 Mar 15.

2.

Phylogeny and History of the Lost SIV from Crab-Eating Macaques: SIVmfa.

McCarthy KR, Johnson WE, Kirmaier A.

PLoS One. 2016 Jul 14;11(7):e0159281. doi: 10.1371/journal.pone.0159281. eCollection 2016.

3.

Time-Dependent Rate Phenomenon in Viruses.

Aiewsakun P, Katzourakis A.

J Virol. 2016 Jul 27;90(16):7184-95. doi: 10.1128/JVI.00593-16. Print 2016 Aug 15.

4.

Identifying selection in the within-host evolution of influenza using viral sequence data.

Illingworth CJ, Fischer A, Mustonen V.

PLoS Comput Biol. 2014 Jul 31;10(7):e1003755. doi: 10.1371/journal.pcbi.1003755. eCollection 2014 Jul.

5.

Retrospective serology study of respiratory virus infections in captive great apes.

Buitendijk H, Fagrouch Z, Niphuis H, Bogers WM, Warren KS, Verschoor EJ.

Viruses. 2014 Mar 24;6(3):1442-53. doi: 10.3390/v6031442.

6.

Host gene evolution traces the evolutionary history of ancient primate lentiviruses.

Compton AA, Malik HS, Emerman M.

Philos Trans R Soc Lond B Biol Sci. 2013 Aug 12;368(1626):20120496. doi: 10.1098/rstb.2012.0496. Print 2013 Sep 19. Review.

7.

Convergence and divergence in the evolution of the APOBEC3G-Vif interaction reveal ancient origins of simian immunodeficiency viruses.

Compton AA, Emerman M.

PLoS Pathog. 2013 Jan;9(1):e1003135. doi: 10.1371/journal.ppat.1003135. Epub 2013 Jan 24.

8.

Origins of HIV and the AIDS pandemic.

Sharp PM, Hahn BH.

Cold Spring Harb Perspect Med. 2011 Sep;1(1):a006841. doi: 10.1101/cshperspect.a006841. Review.

9.

The evolution of HIV: inferences using phylogenetics.

Castro-Nallar E, Pérez-Losada M, Burton GF, Crandall KA.

Mol Phylogenet Evol. 2012 Feb;62(2):777-92. doi: 10.1016/j.ympev.2011.11.019. Epub 2011 Nov 27. Review.

10.

Constraints on HIV-1 diversity from protein structure.

Woo J, Robertson DL, Lovell SC.

J Virol. 2010 Dec;84(24):12995-3003. doi: 10.1128/JVI.00702-10. Epub 2010 Sep 29.

11.

Divergent evolution in reverse transcriptase (RT) of HIV-1 group O and M lineages: impact on structure, fitness, and sensitivity to nonnucleoside RT inhibitors.

Tebit DM, Lobritz M, Lalonde M, Immonen T, Singh K, Sarafianos S, Herchenröder O, Kräusslich HG, Arts EJ.

J Virol. 2010 Oct;84(19):9817-30. doi: 10.1128/JVI.00991-10. Epub 2010 Jul 14.

12.

Genetic characterization of the complete genome of a highly divergent simian T-lymphotropic virus (STLV) type 3 from a wild Cercopithecus mona monkey.

Sintasath DM, Wolfe ND, Zheng HQ, LeBreton M, Peeters M, Tamoufe U, Djoko CF, Diffo JL, Mpoudi-Ngole E, Heneine W, Switzer WM.

Retrovirology. 2009 Oct 27;6:97. doi: 10.1186/1742-4690-6-97.

13.

Tracing the HIV-1 subtype B mobility in Europe: a phylogeographic approach.

Paraskevis D, Pybus O, Magiorkinis G, Hatzakis A, Wensing AM, van de Vijver DA, Albert J, Angarano G, Asjö B, Balotta C, Boeri E, Camacho R, Chaix ML, Coughlan S, Costagliola D, De Luca A, de Mendoza C, Derdelinckx I, Grossman Z, Hamouda O, Hoepelman I, Horban A, Korn K, Kücherer C, Leitner T, Loveday C, Macrae E, Maljkovic-Berry I, Meyer L, Nielsen C, Op de Coul EL, Ormaasen V, Perrin L, Puchhammer-Stöckl E, Ruiz L, Salminen MO, Schmit JC, Schuurman R, Soriano V, Stanczak J, Stanojevic M, Struck D, Van Laethem K, Violin M, Yerly S, Zazzi M, Boucher CA, Vandamme AM; SPREAD Programme.

Retrovirology. 2009 May 20;6:49. doi: 10.1186/1742-4690-6-49.

14.

Dating the age of the SIV lineages that gave rise to HIV-1 and HIV-2.

Wertheim JO, Worobey M.

PLoS Comput Biol. 2009 May;5(5):e1000377. doi: 10.1371/journal.pcbi.1000377. Epub 2009 May 1.

15.

Sharing of endogenous lentiviral gene fragments among leporid lineages separated for more than 12 million years.

van der Loo W, Abrantes J, Esteves PJ.

J Virol. 2009 Mar;83(5):2386-8. doi: 10.1128/JVI.01116-08. Epub 2008 Dec 24.

16.

A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution.

Gifford RJ, Katzourakis A, Tristem M, Pybus OG, Winters M, Shafer RW.

Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20362-7. doi: 10.1073/pnas.0807873105. Epub 2008 Dec 15.

17.

Origin and biology of simian immunodeficiency virus in wild-living western gorillas.

Takehisa J, Kraus MH, Ayouba A, Bailes E, Van Heuverswyn F, Decker JM, Li Y, Rudicell RS, Learn GH, Neel C, Ngole EM, Shaw GM, Peeters M, Sharp PM, Hahn BH.

J Virol. 2009 Feb;83(4):1635-48. doi: 10.1128/JVI.02311-08. Epub 2008 Dec 10.

18.

Identification of a RELIK orthologue in the European hare (Lepus europaeus) reveals a minimum age of 12 million years for the lagomorph lentiviruses.

Keckesova Z, Ylinen LM, Towers GJ, Gifford RJ, Katzourakis A.

Virology. 2009 Feb 5;384(1):7-11. doi: 10.1016/j.virol.2008.10.045. Epub 2008 Dec 13.

19.

Evidence for restriction of ancient primate gammaretroviruses by APOBEC3 but not TRIM5alpha proteins.

Perez-Caballero D, Soll SJ, Bieniasz PD.

PLoS Pathog. 2008 Oct;4(10):e1000181. doi: 10.1371/journal.ppat.1000181. Epub 2008 Oct 17.

20.

Evolution of feline immunodeficiency virus in Felidae: implications for human health and wildlife ecology.

Pecon-Slattery J, Troyer JL, Johnson WE, O'Brien SJ.

Vet Immunol Immunopathol. 2008 May 15;123(1-2):32-44. doi: 10.1016/j.vetimm.2008.01.010. Epub 2008 Jan 19. Review.

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