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Items: 1 to 20 of 38

1.

Chromosomes at Work: Organization of Chromosome Territories in the Interphase Nucleus.

Fritz AJ, Barutcu AR, Martin-Buley L, van Wijnen AJ, Zaidi SK, Imbalzano AN, Lian JB, Stein JL, Stein GS.

J Cell Biochem. 2016 Jan;117(1):9-19. doi: 10.1002/jcb.25280.

2.

Emergent Self-Organized Criticality in Gene Expression Dynamics: Temporal Development of Global Phase Transition Revealed in a Cancer Cell Line.

Tsuchiya M, Giuliani A, Hashimoto M, Erenpreisa J, Yoshikawa K.

PLoS One. 2015 Jun 11;10(6):e0128565. doi: 10.1371/journal.pone.0128565. eCollection 2015.

3.

Reprogramming of fibroblast nuclei in cloned bovine embryos involves major structural remodeling with both striking similarities and differences to nuclear phenotypes of in vitro fertilized embryos.

Popken J, Brero A, Koehler D, Schmid VJ, Strauss A, Wuensch A, Guengoer T, Graf A, Krebs S, Blum H, Zakhartchenko V, Wolf E, Cremer T.

Nucleus. 2014;5(6):555-89. doi: 10.4161/19491034.2014.979712.

4.

Cell type specific alterations in interchromosomal networks across the cell cycle.

Fritz AJ, Stojkovic B, Ding H, Xu J, Bhattacharya S, Berezney R.

PLoS Comput Biol. 2014 Oct 2;10(10):e1003857. doi: 10.1371/journal.pcbi.1003857. eCollection 2014 Oct. Erratum in: PLoS Comput Biol. 2014 Dec;10(12):e1004064.

5.

The 3D genome in transcriptional regulation and pluripotency.

Gorkin DU, Leung D, Ren B.

Cell Stem Cell. 2014 Jun 5;14(6):762-75. doi: 10.1016/j.stem.2014.05.017. Review.

6.

Chromatin hydrodynamics.

Bruinsma R, Grosberg AY, Rabin Y, Zidovska A.

Biophys J. 2014 May 6;106(9):1871-81. doi: 10.1016/j.bpj.2014.03.038.

7.

The dynamic architectural and epigenetic nuclear landscape: developing the genomic almanac of biology and disease.

Tai PW, Zaidi SK, Wu H, Grandy RA, Montecino M, van Wijnen AJ, Lian JB, Stein GS, Stein JL.

J Cell Physiol. 2014 Jun;229(6):711-27. doi: 10.1002/jcp.24508. Review.

8.

Micron-scale coherence in interphase chromatin dynamics.

Zidovska A, Weitz DA, Mitchison TJ.

Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15555-60. doi: 10.1073/pnas.1220313110. Epub 2013 Sep 9.

9.

Nuclear dynamics of radiation-induced foci in euchromatin and heterochromatin.

Chiolo I, Tang J, Georgescu W, Costes SV.

Mutat Res. 2013 Oct;750(1-2):56-66. doi: 10.1016/j.mrfmmm.2013.08.001. Epub 2013 Aug 16. Review.

10.

Dynamic simulation of active/inactive chromatin domains.

Odenheimer J, Kreth G, Heermann DW.

J Biol Phys. 2005 Dec;31(3-4):351-63. doi: 10.1007/s10867-005-7286-3.

11.

Spatio-temporal organization of replication in bacteria and eukaryotes (nucleoids and nuclei).

Jackson D, Wang X, Rudner DZ.

Cold Spring Harb Perspect Biol. 2012 Aug 1;4(8):a010389. doi: 10.1101/cshperspect.a010389. Review.

12.

Long-range autocorrelations of CpG islands in the human genome.

Koester B, Rea TJ, Templeton AR, Szalay AS, Sing CF.

PLoS One. 2012;7(1):e29889. doi: 10.1371/journal.pone.0029889. Epub 2012 Jan 11.

13.

Innate structure of DNA foci restricts the mixing of DNA from different chromosome territories.

Olivares-Chauvet P, Fennessy D, Jackson DA, Maya-Mendoza A.

PLoS One. 2011;6(12):e27527. doi: 10.1371/journal.pone.0027527. Epub 2011 Dec 21.

14.

4D chromatin dynamics in cycling cells: Theodor Boveri's hypotheses revisited.

Strickfaden H, Zunhammer A, van Koningsbruggen S, Köhler D, Cremer T.

Nucleus. 2010 May-Jun;1(3):284-97. doi: 10.4161/nucl.1.3.11969. Epub 2010 Apr 6.

15.

Quantifying translational mobility in neurons: comparison between current optical techniques.

Kim SA, Sanabria H, Digman MA, Gratton E, Schwille P, Zipfel WR, Waxham MN.

J Neurosci. 2010 Dec 8;30(49):16409-16. doi: 10.1523/JNEUROSCI.3063-10.2010. Review. No abstract available.

16.

Nonrigid registration of 2-D and 3-D dynamic cell nuclei images for improved classification of subcellular particle motion.

Kim IH, Chen YC, Spector DL, Eils R, Rohr K.

IEEE Trans Image Process. 2011 Apr;20(4):1011-22. doi: 10.1109/TIP.2010.2076377. Epub 2010 Sep 13.

17.

Chromatin dynamics.

Hübner MR, Spector DL.

Annu Rev Biophys. 2010;39:471-89. doi: 10.1146/annurev.biophys.093008.131348. Review.

18.

S phase progression in human cells is dictated by the genetic continuity of DNA foci.

Maya-Mendoza A, Olivares-Chauvet P, Shaw A, Jackson DA.

PLoS Genet. 2010 Apr 8;6(4):e1000900. doi: 10.1371/journal.pgen.1000900.

19.

Chromosome territories.

Cremer T, Cremer M.

Cold Spring Harb Perspect Biol. 2010 Mar;2(3):a003889. doi: 10.1101/cshperspect.a003889. Review.

20.

Parallax: high accuracy three-dimensional single molecule tracking using split images.

Sun Y, McKenna JD, Murray JM, Ostap EM, Goldman YE.

Nano Lett. 2009 Jul;9(7):2676-82. doi: 10.1021/nl901129j.

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