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Items: 1 to 20 of 83

1.
2.
3.

Adjust quality scores from alignment and improve sequencing accuracy.

Li M, Nordborg M, Li LM.

Nucleic Acids Res. 2004 Sep 30;32(17):5183-91. Print 2004.

4.

Basecalling with LifeTrace.

Walther D, Bartha G, Morris M.

Genome Res. 2001 May;11(5):875-88.

5.

Sequence length and error analysis of Sequenase and automated Taq cycle sequencing methods.

Koop BF, Rowan L, Chen WQ, Deshpande P, Lee H, Hood L.

Biotechniques. 1993 Mar;14(3):442-7.

PMID:
8457352
6.

Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Ewing B, Hillier L, Wendl MC, Green P.

Genome Res. 1998 Mar;8(3):175-85.

7.

Consed: a graphical tool for sequence finishing.

Gordon D, Abajian C, Green P.

Genome Res. 1998 Mar;8(3):195-202.

8.

Mapping short DNA sequencing reads and calling variants using mapping quality scores.

Li H, Ruan J, Durbin R.

Genome Res. 2008 Nov;18(11):1851-8. doi: 10.1101/gr.078212.108. Epub 2008 Aug 19.

9.

Evaluation of window cohabitation of DNA sequencing errors and lowest PHRED quality values.

Prosdocimi F, Peixoto FC, Ortega JM.

Genet Mol Res. 2004 Dec 30;3(4):483-92.

10.

Scipio: using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species.

Keller O, Odronitz F, Stanke M, Kollmar M, Waack S.

BMC Bioinformatics. 2008 Jun 13;9:278. doi: 10.1186/1471-2105-9-278.

11.

Gene identification through large-scale EST sequence processing.

Lindlöf A.

Appl Bioinformatics. 2003;2(3):123-9. Review.

PMID:
15130797
12.

A frameshift error detection algorithm for DNA sequencing projects.

Fichant GA, Quentin Y.

Nucleic Acids Res. 1995 Aug 11;23(15):2900-8.

13.

Effects of sample re-sequencing and trimming on the quality and size of assembled consensus sequences.

Prosdocimi F, Lopes DA, Peixoto FC, Mourão MM, Pacífico LG, Ribeiro RA, Ortega JM.

Genet Mol Res. 2007 Oct 5;6(4):756-65.

14.

ESTprep: preprocessing cDNA sequence reads.

Scheetz TE, Trivedi N, Roberts CA, Kucaba T, Berger B, Robinson NL, Birkett CL, Gavin AJ, O'Leary B, Braun TA, Bonaldo MF, Robinson JP, Sheffield VC, Soares MB, Casavant TL.

Bioinformatics. 2003 Jul 22;19(11):1318-24.

PMID:
12874042
15.

ESTMAP: a system for expressed sequence tags mapping on genomic sequences.

Milanesi L, Rogozin IB.

IEEE Trans Nanobioscience. 2003 Jun;2(2):75-8.

PMID:
15382662
16.

Quality scores and SNP detection in sequencing-by-synthesis systems.

Brockman W, Alvarez P, Young S, Garber M, Giannoukos G, Lee WL, Russ C, Lander ES, Nusbaum C, Jaffe DB.

Genome Res. 2008 May;18(5):763-70. doi: 10.1101/gr.070227.107. Epub 2008 Jan 22.

17.
18.

HiTEC: accurate error correction in high-throughput sequencing data.

Ilie L, Fazayeli F, Ilie S.

Bioinformatics. 2011 Feb 1;27(3):295-302. doi: 10.1093/bioinformatics/btq653. Epub 2010 Nov 26.

PMID:
21115437
19.

Multiple alignment of DNA sequences with MAFFT.

Katoh K, Asimenos G, Toh H.

Methods Mol Biol. 2009;537:39-64. doi: 10.1007/978-1-59745-251-9_3.

PMID:
19378139
20.

Amino acid translation program for full-length cDNA sequences with frameshift errors.

Fukunishi Y, Hayashizaki Y.

Physiol Genomics. 2001 Mar 8;5(2):81-7.

PMID:
11242592

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