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Items: 1 to 20 of 74

1.

Detection of RNA polymerase II promoters and polyadenylation sites in human DNA sequence.

Matis S, Xu Y, Shah M, Guan X, Einstein JR, Mural R, Uberbacher E.

Comput Chem. 1996 Mar;20(1):135-40.

PMID:
8867844
2.

Promoter2.0: for the recognition of PolII promoter sequences.

Knudsen S.

Bioinformatics. 1999 May;15(5):356-61.

PMID:
10366655
3.

Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters.

Bajic VB, Seah SH, Chong A, Zhang G, Koh JL, Brusic V.

Bioinformatics. 2002 Jan;18(1):198-9.

PMID:
11836231
4.

Characterization of transcription from TATA-less promoters: identification of a new core promoter element XCPE2 and analysis of factor requirements.

Anish R, Hossain MB, Jacobson RH, Takada S.

PLoS One. 2009;4(4):e5103. doi: 10.1371/journal.pone.0005103.

5.
6.

PromFD 1.0: a computer program that predicts eukaryotic pol II promoters using strings and IMD matrices.

Chen QK, Hertz GZ, Stormo GD.

Comput Appl Biosci. 1997 Feb;13(1):29-35.

PMID:
9088706
7.

Discovering and understanding genes in human DNA sequence using GRAIL.

Uberbacher EC, Xu Y, Mural RJ.

Methods Enzymol. 1996;266:259-81. No abstract available.

PMID:
8743689
8.

Computer model for recognition of functional transcription start sites in RNA polymerase II promoters of vertebrates.

Bajic VB, Seah SH, Chong A, Krishnan SP, Koh JL, Brusic V.

J Mol Graph Model. 2003 Mar;21(5):323-32.

PMID:
12543131
9.

Poly(U) and polyadenylation termination signals are interchangeable for terminating the expression of shRNA from a pol II promoter.

Song J, Pang S, Lu Y, Chiu R.

Biochem Biophys Res Commun. 2004 Oct 15;323(2):573-8.

PMID:
15369789
10.
11.
12.

Recognizing exons in genomic sequence using GRAIL II.

Xu Y, Mural R, Shah M, Uberbacher E.

Genet Eng (N Y). 1994;16:241-53.

PMID:
7765200
13.

Computational analysis of plant RNA Pol-II promoters.

Pandey SP, Krishnamachari A.

Biosystems. 2006 Jan;83(1):38-50.

PMID:
16236422
14.

DNA structure in human RNA polymerase II promoters.

Pedersen AG, Baldi P, Chauvin Y, Brunak S.

J Mol Biol. 1998 Aug 28;281(4):663-73.

PMID:
9710538
15.

Recruitment of human TBP selectively activates RNA polymerase II TATA-dependent promoters.

Majello B, Napolitano G, De Luca P, Lania L.

J Biol Chem. 1998 Jun 26;273(26):16509-16.

16.

Predicting polymerase II core promoters by cooperating transcription factor binding sites in eukaryotic genes.

Ma XT, Qian MP, Tang HX.

Acta Biochim Biophys Sin (Shanghai). 2004 Apr;36(4):250-8.

PMID:
15253150
17.

Fli-1b is generated by usage of differential splicing and alternative promoter.

Dhulipala PD, Lee L, Rao VN, Reddy ES.

Oncogene. 1998 Sep 3;17(9):1149-57.

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