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Items: 1 to 20 of 76

2.
5.

Identifying sequence-structure pairs undetected by sequence alignments.

Miyazawa S, Jernigan RL.

Protein Eng. 2000 Jul;13(7):459-75.

PMID:
10906342
6.

Improving the quality of twilight-zone alignments.

Jaroszewski L, Rychlewski L, Godzik A.

Protein Sci. 2000 Aug;9(8):1487-96.

7.

Predicting reliable regions in protein alignments from sequence profiles.

Tress ML, Jones D, Valencia A.

J Mol Biol. 2003 Jul 18;330(4):705-18.

PMID:
12850141
8.
11.

Large-scale comparison of protein sequence alignment algorithms with structure alignments.

Sauder JM, Arthur JW, Dunbrack RL Jr.

Proteins. 2000 Jul 1;40(1):6-22.

PMID:
10813826
12.

Fold assignments for amino acid sequences of the CASP2 experiment.

Rice DW, Fischer D, Weiss R, Eisenberg D.

Proteins. 1997;Suppl 1:113-22.

PMID:
9485502
13.
14.
15.

Covariation analysis of local amino acid sequences in recurrent protein local structures.

Wang LY.

J Bioinform Comput Biol. 2005 Dec;3(6):1391-409.

PMID:
16374913
16.

Three-dimensional profiles for analysing protein sequence-structure relationships.

Eisenberg D, Bowie JU, Lüthy R, Choe S.

Faraday Discuss. 1992;(93):25-34. Review.

PMID:
1290936
17.

DPANN: improved sequence to structure alignments following fold recognition.

Reinhardt A, Eisenberg D.

Proteins. 2004 Aug 15;56(3):528-38.

PMID:
15229885
18.

A comparison of scoring functions for protein sequence profile alignment.

Edgar RC, Sjölander K.

Bioinformatics. 2004 May 22;20(8):1301-8. Epub 2004 Feb 12.

PMID:
14962936
19.

Filtered neighbors threading.

Bienkowska JR, Rogers RG Jr, Smith TF.

Proteins. 1999 Nov 15;37(3):346-59.

PMID:
10591096

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