Similar articles for PMID: 32211031

Year	Number of Results
2008	2
2010	6
2011	8
2012	5
2013	4
2014	9
2015	8
2016	7
2017	10
2018	9
2019	6
2020	7
2021	10
2022	10
2023	7
2024	0

1

Testing Proximity of Genomic Regions to Transcription Start Sites and Enhancers Complements Gene Set Enrichment Testing.

Lee C, Wang K, Qin T, Sartor MA. Lee C, et al. Front Genet. 2020 Mar 6;11:199. doi: 10.3389/fgene.2020.00199. eCollection 2020. Front Genet. 2020. PMID: 32211031 Free PMC article.

2

Poly-Enrich: count-based methods for gene set enrichment testing with genomic regions.

Lee CT, Cavalcante RG, Lee C, Qin T, Patil S, Wang S, Tsai ZTY, Boyle AP, Sartor MA. Lee CT, et al. NAR Genom Bioinform. 2020 Mar;2(1):lqaa006. doi: 10.1093/nargab/lqaa006. Epub 2020 Feb 6. NAR Genom Bioinform. 2020. PMID: 32051932 Free PMC article.

3

ChIP-Enrich: gene set enrichment testing for ChIP-seq data.

Welch RP, Lee C, Imbriano PM, Patil S, Weymouth TE, Smith RA, Scott LJ, Sartor MA. Welch RP, et al. Nucleic Acids Res. 2014 Jul;42(13):e105. doi: 10.1093/nar/gku463. Epub 2014 May 30. Nucleic Acids Res. 2014. PMID: 24878920 Free PMC article.

4

Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data.

Qin T, Lee C, Li S, Cavalcante RG, Orchard P, Yao H, Zhang H, Wang S, Patil S, Boyle AP, Sartor MA. Qin T, et al. Genome Biol. 2022 Apr 26;23(1):105. doi: 10.1186/s13059-022-02668-0. Genome Biol. 2022. PMID: 35473573 Free PMC article.

5

PEGS: An efficient tool for gene set enrichment within defined sets of genomic intervals.

Briggs P, Hunter AL, Yang SH, Sharrocks AD, Iqbal M. Briggs P, et al. F1000Res. 2021 Jul 15;10:570. doi: 10.12688/f1000research.53926.2. eCollection 2021. F1000Res. 2021. PMID: 34504687 Free PMC article.

6

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data.

Zhu LJ, Gazin C, Lawson ND, Pagès H, Lin SM, Lapointe DS, Green MR. Zhu LJ, et al. BMC Bioinformatics. 2010 May 11;11:237. doi: 10.1186/1471-2105-11-237. BMC Bioinformatics. 2010. PMID: 20459804 Free PMC article.

7

Putative enhancer sites in the bovine genome are enriched with variants affecting complex traits.

Wang M, Hancock TP, MacLeod IM, Pryce JE, Cocks BG, Hayes BJ. Wang M, et al. Genet Sel Evol. 2017 Jul 6;49(1):56. doi: 10.1186/s12711-017-0331-4. Genet Sel Evol. 2017. PMID: 28683716 Free PMC article.

8

Improving the annotation of the cattle genome by annotating transcription start sites in a diverse set of tissues and populations using Cap Analysis Gene Expression sequencing.

Salavati M, Clark R, Becker D, Kühn C, Plastow G, Dupont S, Moreira GCM, Charlier C, Clark EL. Salavati M, et al. G3 (Bethesda). 2023 Aug 9;13(8):jkad108. doi: 10.1093/g3journal/jkad108. G3 (Bethesda). 2023. PMID: 37216666 Free PMC article.

9

ALGAEFUN with MARACAS, microALGAE FUNctional enrichment tool for MicroAlgae RnA-seq and Chip-seq AnalysiS.

Romero-Losada AB, Arvanitidou C, de Los Reyes P, García-González M, Romero-Campero FJ. Romero-Losada AB, et al. BMC Bioinformatics. 2022 Mar 31;23(1):113. doi: 10.1186/s12859-022-04639-5. BMC Bioinformatics. 2022. PMID: 35361110 Free PMC article.

10

ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach.

Chen X, Shi X, Neuwald AF, Hilakivi-Clarke L, Clarke R, Xuan J. Chen X, et al. BMC Bioinformatics. 2021 Apr 15;22(1):193. doi: 10.1186/s12859-021-04108-5. BMC Bioinformatics. 2021. PMID: 33858322 Free PMC article.

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