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Items: 1 to 20 of 113

1.

In situ structure determination at nanometer resolution using TYGRESS.

Song K, Shang Z, Fu X, Lou X, Grigorieff N, Nicastro D.

Nat Methods. 2019 Nov 25. doi: 10.1038/s41592-019-0651-0. [Epub ahead of print]

PMID:
31768058
2.

Subtomogram averaging from cryo-electron tomograms.

Leigh KE, Navarro PP, Scaramuzza S, Chen W, Zhang Y, Castaño-Díez D, Kudryashev M.

Methods Cell Biol. 2019;152:217-259. doi: 10.1016/bs.mcb.2019.04.003. Epub 2019 May 15.

PMID:
31326022
3.

Cryo-Electron Tomography and Subtomogram Averaging.

Wan W, Briggs JA.

Methods Enzymol. 2016;579:329-67. doi: 10.1016/bs.mie.2016.04.014. Epub 2016 Jun 22. Review.

PMID:
27572733
4.

Resolving macromolecular structures from electron cryo-tomography data using subtomogram averaging in RELION.

Bharat TA, Scheres SH.

Nat Protoc. 2016 Nov;11(11):2054-65. doi: 10.1038/nprot.2016.124. Epub 2016 Sep 29.

5.
6.

Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4Å.

Turoňová B, Schur FKM, Wan W, Briggs JAG.

J Struct Biol. 2017 Sep;199(3):187-195. doi: 10.1016/j.jsb.2017.07.007. Epub 2017 Jul 22.

7.

In situ localization of N and C termini of subunits of the flagellar nexin-dynein regulatory complex (N-DRC) using SNAP tag and cryo-electron tomography.

Song K, Awata J, Tritschler D, Bower R, Witman GB, Porter ME, Nicastro D.

J Biol Chem. 2015 Feb 27;290(9):5341-53. doi: 10.1074/jbc.M114.626556. Epub 2015 Jan 6.

8.

Thresholding of cryo-EM density maps by false discovery rate control.

Beckers M, Jakobi AJ, Sachse C.

IUCrJ. 2019 Jan 1;6(Pt 1):18-33. doi: 10.1107/S2052252518014434. eCollection 2019 Jan 1.

9.

A novel constrained reconstruction model towards high-resolution sub-tomogram averaging.

Han R, Li L, Yang P, Zhang F, Gao X.

Bioinformatics. 2019 Oct 16. pii: btz787. doi: 10.1093/bioinformatics/btz787. [Epub ahead of print]

PMID:
31617571
10.

Toward high-resolution in situ structural biology with cryo-electron tomography and subtomogram averaging.

Schur FK.

Curr Opin Struct Biol. 2019 Oct;58:1-9. doi: 10.1016/j.sbi.2019.03.018. Epub 2019 Apr 18. Review.

PMID:
31005754
11.

In situ cryo-electron tomography and subtomogram averaging of intraflagellar transport trains.

Jordan MA, Pigino G.

Methods Cell Biol. 2019;152:179-195. doi: 10.1016/bs.mcb.2019.04.005. Epub 2019 May 27.

PMID:
31326020
12.

MBIR: A cryo-ET 3D reconstruction method that effectively minimizes missing wedge artifacts and restores missing information.

Yan R, Venkatakrishnan SV, Liu J, Bouman CA, Jiang W.

J Struct Biol. 2019 May 1;206(2):183-192. doi: 10.1016/j.jsb.2019.03.002. Epub 2019 Mar 11.

PMID:
30872095
13.

Fine-grained alignment of cryo-electron subtomograms based on MPI parallel optimization.

Lü Y, Zeng X, Zhao X, Li S, Li H, Gao X, Xu M.

BMC Bioinformatics. 2019 Aug 28;20(1):443. doi: 10.1186/s12859-019-3003-2.

14.

3D structural analysis of flagella/cilia by cryo-electron tomography.

Bui KH, Ishikawa T.

Methods Enzymol. 2013;524:305-23. doi: 10.1016/B978-0-12-397945-2.00017-2.

PMID:
23498747
15.
16.

Quantifying resolution limiting factors in subtomogram averaged cryo-electron tomography using simulations.

Voortman LM, Vulović M, Maletta M, Voigt A, Franken EM, Simonetti A, Peters PJ, van Vliet LJ, Rieger B.

J Struct Biol. 2014 Aug;187(2):103-111. doi: 10.1016/j.jsb.2014.06.007. Epub 2014 Jul 3.

PMID:
24998892
17.

emClarity: software for high-resolution cryo-electron tomography and subtomogram averaging.

Himes BA, Zhang P.

Nat Methods. 2018 Nov;15(11):955-961. doi: 10.1038/s41592-018-0167-z. Epub 2018 Oct 22.

18.

Cryo-electron tomography for the structural study of mitochondrial translation.

Englmeier R, Förster F.

Tissue Cell. 2019 Apr;57:129-138. doi: 10.1016/j.tice.2018.08.009. Epub 2018 Aug 29. Review.

PMID:
30197222
19.

Dynamo Catalogue: Geometrical tools and data management for particle picking in subtomogram averaging of cryo-electron tomograms.

Castaño-Díez D, Kudryashev M, Stahlberg H.

J Struct Biol. 2017 Feb;197(2):135-144. doi: 10.1016/j.jsb.2016.06.005. Epub 2016 Jun 8.

PMID:
27288866
20.

Single-Particle Cryo-EM and 3D Reconstruction of Hybrid Nanoparticles with Electron-Dense Components.

Yu G, Yan R, Zhang C, Mao C, Jiang W.

Small. 2015 Oct;11(38):5157-63. doi: 10.1002/smll.201500531. Epub 2015 Jul 14.

PMID:
26179326

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