Similar articles for PMID: 31750888

Year	Number of Results
2011	1
2012	3
2013	10
2014	14
2015	13
2016	13
2017	7
2018	15
2019	12
2020	7
2021	9
2022	5
2023	3
2024	0

1

All-FIT: allele-frequency-based imputation of tumor purity from high-depth sequencing data.

Loh JW, Guccione C, Di Clemente F, Riedlinger G, Ganesan S, Khiabanian H. Loh JW, et al. Bioinformatics. 2020 Apr 1;36(7):2173-2180. doi: 10.1093/bioinformatics/btz865. Bioinformatics. 2020. PMID: 31750888 Free PMC article.

2

A computational approach to distinguish somatic vs. germline origin of genomic alterations from deep sequencing of cancer specimens without a matched normal.

Sun JX, He Y, Sanford E, Montesion M, Frampton GM, Vignot S, Soria JC, Ross JS, Miller VA, Stephens PJ, Lipson D, Yelensky R. Sun JX, et al. PLoS Comput Biol. 2018 Feb 7;14(2):e1005965. doi: 10.1371/journal.pcbi.1005965. eCollection 2018 Feb. PLoS Comput Biol. 2018. PMID: 29415044 Free PMC article.

3

Accurity: accurate tumor purity and ploidy inference from tumor-normal WGS data by jointly modelling somatic copy number alterations and heterozygous germline single-nucleotide-variants.

Luo Z, Fan X, Su Y, Huang YS. Luo Z, et al. Bioinformatics. 2018 Jun 15;34(12):2004-2011. doi: 10.1093/bioinformatics/bty043. Bioinformatics. 2018. PMID: 29385401 Free PMC article.

4

A method to reduce ancestry related germline false positives in tumor only somatic variant calling.

Halperin RF, Carpten JD, Manojlovic Z, Aldrich J, Keats J, Byron S, Liang WS, Russell M, Enriquez D, Claasen A, Cherni I, Awuah B, Oppong J, Wicha MS, Newman LA, Jaigge E, Kim S, Craig DW. Halperin RF, et al. BMC Med Genomics. 2017 Oct 19;10(1):61. doi: 10.1186/s12920-017-0296-8. BMC Med Genomics. 2017. PMID: 29052513 Free PMC article.

5

QuantumClone: clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction.

Deveau P, Colmet Daage L, Oldridge D, Bernard V, Bellini A, Chicard M, Clement N, Lapouble E, Combaret V, Boland A, Meyer V, Deleuze JF, Janoueix-Lerosey I, Barillot E, Delattre O, Maris JM, Schleiermacher G, Boeva V. Deveau P, et al. Bioinformatics. 2018 Jun 1;34(11):1808-1816. doi: 10.1093/bioinformatics/bty016. Bioinformatics. 2018. PMID: 29342233 Free PMC article.

6

Tumor purity quantification by clonal DNA methylation signatures.

Benelli M, Romagnoli D, Demichelis F. Benelli M, et al. Bioinformatics. 2018 May 15;34(10):1642-1649. doi: 10.1093/bioinformatics/bty011. Bioinformatics. 2018. PMID: 29325057 Free PMC article.

7

Constructing germline research cohorts from the discarded reads of clinical tumor sequences.

Gusev A, Groha S, Taraszka K, Semenov YR, Zaitlen N. Gusev A, et al. Genome Med. 2021 Nov 8;13(1):179. doi: 10.1186/s13073-021-00999-4. Genome Med. 2021. PMID: 34749793 Free PMC article.

8

Clonality Inference from Single Tumor Samples Using Low-Coverage Sequence Data.

Donmez N, Malikic S, Wyatt AW, Gleave ME, Collins CC, Sahinalp SC. Donmez N, et al. J Comput Biol. 2017 Jun;24(6):515-523. doi: 10.1089/cmb.2016.0148. Epub 2017 Jan 5. J Comput Biol. 2017. PMID: 28056180

9

AbsCN-seq: a statistical method to estimate tumor purity, ploidy and absolute copy numbers from next-generation sequencing data.

Bao L, Pu M, Messer K. Bao L, et al. Bioinformatics. 2014 Apr 15;30(8):1056-1063. doi: 10.1093/bioinformatics/btt759. Epub 2014 Jan 2. Bioinformatics. 2014. PMID: 24389661 Free PMC article.

10

Mutascope: sensitive detection of somatic mutations from deep amplicon sequencing.

Yost SE, Alakus H, Matsui H, Schwab RB, Jepsen K, Frazer KA, Harismendy O. Yost SE, et al. Bioinformatics. 2013 Aug 1;29(15):1908-9. doi: 10.1093/bioinformatics/btt305. Epub 2013 May 27. Bioinformatics. 2013. PMID: 23712659 Free PMC article.

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