Similar articles for PMID: 31539245

Year	Number of Results
2002	2
2007	1
2008	6
2009	3
2010	11
2011	11
2012	12
2013	15
2014	13
2015	20
2016	16
2017	11
2018	18
2019	22
2020	17
2021	16
2022	26
2023	10
2024	0

1

Replica-Exchange Umbrella Sampling Combined with Gaussian Accelerated Molecular Dynamics for Free-Energy Calculation of Biomolecules.

Oshima H, Re S, Sugita Y. Oshima H, et al. J Chem Theory Comput. 2019 Oct 8;15(10):5199-5208. doi: 10.1021/acs.jctc.9b00761. Epub 2019 Sep 27. J Chem Theory Comput. 2019. PMID: 31539245

2

Gaussian accelerated molecular dynamics (GaMD): principles and applications.

Wang J, Arantes PR, Bhattarai A, Hsu RV, Pawnikar S, Huang YM, Palermo G, Miao Y. Wang J, et al. Wiley Interdiscip Rev Comput Mol Sci. 2021 Sep-Oct;11(5):e1521. doi: 10.1002/wcms.1521. Epub 2021 Mar 1. Wiley Interdiscip Rev Comput Mol Sci. 2021. PMID: 34899998 Free PMC article.

3

Replica Exchange Gaussian Accelerated Molecular Dynamics: Improved Enhanced Sampling and Free Energy Calculation.

Huang YM, McCammon JA, Miao Y. Huang YM, et al. J Chem Theory Comput. 2018 Apr 10;14(4):1853-1864. doi: 10.1021/acs.jctc.7b01226. Epub 2018 Mar 12. J Chem Theory Comput. 2018. PMID: 29489349 Free PMC article.

4

Gaussian Accelerated Molecular Dynamics in NAMD.

Pang YT, Miao Y, Wang Y, McCammon JA. Pang YT, et al. J Chem Theory Comput. 2017 Jan 10;13(1):9-19. doi: 10.1021/acs.jctc.6b00931. Epub 2016 Dec 30. J Chem Theory Comput. 2017. PMID: 28034310 Free PMC article.

5

Replica-Exchange Methods for Biomolecular Simulations.

Sugita Y, Kamiya M, Oshima H, Re S. Sugita Y, et al. Methods Mol Biol. 2019;2022:155-177. doi: 10.1007/978-1-4939-9608-7_7. Methods Mol Biol. 2019. PMID: 31396903

6

Gaussian Accelerated Molecular Dynamics: Unconstrained Enhanced Sampling and Free Energy Calculation.

Miao Y, Feher VA, McCammon JA. Miao Y, et al. J Chem Theory Comput. 2015 Aug 11;11(8):3584-3595. doi: 10.1021/acs.jctc.5b00436. Epub 2015 Jul 14. J Chem Theory Comput. 2015. PMID: 26300708 Free PMC article.

7

Gaussian Accelerated Molecular Dynamics: Theory, Implementation, and Applications.

Miao Y, McCammon JA. Miao Y, et al. Annu Rep Comput Chem. 2017;13:231-278. doi: 10.1016/bs.arcc.2017.06.005. Epub 2017 Aug 10. Annu Rep Comput Chem. 2017. PMID: 29720925 Free PMC article.

8

Boosting the conformational sampling by combining replica exchange with solute tempering and well-sliced metadynamics.

Kapakayala AB, Nair NN. Kapakayala AB, et al. J Comput Chem. 2021 Dec 5;42(31):2233-2240. doi: 10.1002/jcc.26752. Epub 2021 Sep 29. J Comput Chem. 2021. PMID: 34585768

9

Enhanced sampling and free energy calculations for protein simulations.

Liao Q. Liao Q. Prog Mol Biol Transl Sci. 2020;170:177-213. doi: 10.1016/bs.pmbts.2020.01.006. Epub 2020 Feb 19. Prog Mol Biol Transl Sci. 2020. PMID: 32145945

10

Acceleration of biomolecular kinetics in Gaussian accelerated molecular dynamics.

Miao Y. Miao Y. J Chem Phys. 2018 Aug 21;149(7):072308. doi: 10.1063/1.5024217. J Chem Phys. 2018. PMID: 30134710 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Results by year

Text availability

Article attribute

Article type

Publication date

207 results

Results by year