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Comprehensive Characterization of Somatic Mutations Impacting lncRNA Expression for Pan-Cancer.

Gao Y, Li X, Zhi H, Zhang Y, Wang P, Wang Y, Shang S, Fang Y, Shen W, Ning S, Chen SX, Li X.

Mol Ther Nucleic Acids. 2019 Aug 14;18:66-79. doi: 10.1016/j.omtn.2019.08.004. [Epub ahead of print]


Comprehensive characterization of lncRNA-mRNA related ceRNA network across 12 major cancers.

Zhang Y, Xu Y, Feng L, Li F, Sun Z, Wu T, Shi X, Li J, Li X.

Oncotarget. 2016 Sep 27;7(39):64148-64167. doi: 10.18632/oncotarget.11637.


Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function.

Cabanski CR, White NM, Dang HX, Silva-Fisher JM, Rauck CE, Cicka D, Maher CA.

RNA Biol. 2015;12(6):628-42. doi: 10.1080/15476286.2015.1038012.


Integrative analysis reveals clinical phenotypes and oncogenic potentials of long non-coding RNAs across 15 cancer types.

Wang ZL, Li B, Piccolo SR, Zhang XQ, Li JH, Zhou H, Yang JH, Qu LH.

Oncotarget. 2016 Jun 7;7(23):35044-55. doi: 10.18632/oncotarget.9037.


lnCaNet: pan-cancer co-expression network for human lncRNA and cancer genes.

Liu Y, Zhao M.

Bioinformatics. 2016 May 15;32(10):1595-7. doi: 10.1093/bioinformatics/btw017. Epub 2016 Jan 18.


LncmiRSRN: identification and analysis of long non-coding RNA related miRNA sponge regulatory network in human cancer.

Zhang J, Liu L, Li J, Le TD.

Bioinformatics. 2018 Dec 15;34(24):4232-4240. doi: 10.1093/bioinformatics/bty525.


Prioritization of non-coding disease-causing variants and long non-coding RNAs in liver cancer.

Li H, He Z, Gu Y, Fang L, Lv X.

Oncol Lett. 2016 Nov;12(5):3987-3994. Epub 2016 Sep 14.


SNPs and Somatic Mutation on Long Non-Coding RNA: New Frontier in the Cancer Studies?

Minotti L, Agnoletto C, Baldassari F, CorrĂ  F, Volinia S.

High Throughput. 2018 Nov 16;7(4). pii: E34. doi: 10.3390/ht7040034. Review.


Pan-cancer transcriptomic analysis associates long non-coding RNAs with key mutational driver events.

Ashouri A, Sayin VI, Van den Eynden J, Singh SX, Papagiannakopoulos T, Larsson E.

Nat Commun. 2016 Oct 25;7:13197. doi: 10.1038/ncomms13197.


Comprehensive functional profiling of long non-coding RNAs through a novel pan-cancer integration approach and modular analysis of their protein-coding gene association networks.

Walters K, Sarsenov R, Too WS, Hare RK, Paterson IC, Lambert DW, Brown S, Bradford JR.

BMC Genomics. 2019 Jun 3;20(1):454. doi: 10.1186/s12864-019-5850-7.


Prediction of long noncoding RNA functions with co-expression network in esophageal squamous cell carcinoma.

Hao Y, Wu W, Shi F, Dalmolin RJ, Yan M, Tian F, Chen X, Chen G, Cao W.

BMC Cancer. 2015 Mar 24;15:168. doi: 10.1186/s12885-015-1179-z.


lnCAR: A Comprehensive Resource for lncRNAs from Cancer Arrays.

Zheng Y, Xu Q, Liu M, Hu H, Xie Y, Zuo Z, Ren J.

Cancer Res. 2019 Apr 15;79(8):2076-2083. doi: 10.1158/0008-5472.CAN-18-2169. Epub 2019 Feb 20.


SomamiR 2.0: a database of cancer somatic mutations altering microRNA-ceRNA interactions.

Bhattacharya A, Cui Y.

Nucleic Acids Res. 2016 Jan 4;44(D1):D1005-10. doi: 10.1093/nar/gkv1220. Epub 2015 Nov 17.


Discovering DNA methylation patterns for long non-coding RNAs associated with cancer subtypes.

Ma X, Yu L, Wang P, Yang X.

Comput Biol Chem. 2017 Aug;69:164-170. doi: 10.1016/j.compbiolchem.2017.03.014. Epub 2017 May 4.


Identification and characterization of conserved lncRNAs in human and rat brain.

Li D, Yang MQ.

BMC Bioinformatics. 2017 Dec 28;18(Suppl 14):489. doi: 10.1186/s12859-017-1890-7. Erratum in: BMC Bioinformatics. 2018 May 24;19(1):181.


Comprehensive Identification of Long Non-coding RNAs in Purified Cell Types from the Brain Reveals Functional LncRNA in OPC Fate Determination.

Dong X, Chen K, Cuevas-Diaz Duran R, You Y, Sloan SA, Zhang Y, Zong S, Cao Q, Barres BA, Wu JQ.

PLoS Genet. 2015 Dec 18;11(12):e1005669. doi: 10.1371/journal.pgen.1005669. eCollection 2015 Dec.


A pan-cancer atlas of cancer hallmark-associated candidate driver lncRNAs.

Deng Y, Luo S, Zhang X, Zou C, Yuan H, Liao G, Xu L, Deng C, Lan Y, Zhao T, Gao X, Xiao Y, Li X.

Mol Oncol. 2018 Nov;12(11):1980-2005. doi: 10.1002/1878-0261.12381. Epub 2018 Oct 2.


Long Noncoding RNA and Cancer: A New Paradigm.

Bhan A, Soleimani M, Mandal SS.

Cancer Res. 2017 Aug 1;77(15):3965-3981. doi: 10.1158/0008-5472.CAN-16-2634. Epub 2017 Jul 12. Review.

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