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Items: 1 to 20 of 103

1.

Community Curation and Expert Curation of Human Long Noncoding RNAs with LncRNAWiki and LncBook.

Ma L, Cao J, Liu L, Li Z, Shireen H, Pervaiz N, Batool F, Raza RZ, Zou D, Bao Y, Abbasi AA, Zhang Z.

Curr Protoc Bioinformatics. 2019 Sep;67(1):e82. doi: 10.1002/cpbi.82.

PMID:
31524988
2.

LncBook: a curated knowledgebase of human long non-coding RNAs.

Ma L, Cao J, Liu L, Du Q, Li Z, Zou D, Bajic VB, Zhang Z.

Nucleic Acids Res. 2019 Jan 8;47(D1):D128-D134. doi: 10.1093/nar/gky960. Erratum in: Nucleic Acids Res. 2019 Mar 18;47(5):2699.

3.

LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs.

Ma L, Li A, Zou D, Xu X, Xia L, Yu J, Bajic VB, Zhang Z.

Nucleic Acids Res. 2015 Jan;43(Database issue):D187-92. doi: 10.1093/nar/gku1167. Epub 2014 Nov 15.

4.

RiceWiki: a wiki-based database for community curation of rice genes.

Zhang Z, Sang J, Ma L, Wu G, Wu H, Huang D, Zou D, Liu S, Li A, Hao L, Tian M, Xu C, Wang X, Wu J, Xiao J, Dai L, Chen LL, Hu S, Yu J.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1222-8. doi: 10.1093/nar/gkt926. Epub 2013 Oct 16.

5.

Using the NONCODE Database Resource.

Xiyuan L, Dechao B, Liang S, Yang W, Shuangsang F, Hui L, Haitao L, Chunlong L, Wenzheng F, Runsheng C, Yi Z.

Curr Protoc Bioinformatics. 2017 Jun 27;58:12.16.1-12.16.19. doi: 10.1002/cpbi.25.

PMID:
28654727
6.

A comprehensive overview of lncRNA annotation resources.

Xu J, Bai J, Zhang X, Lv Y, Gong Y, Liu L, Zhao H, Yu F, Ping Y, Zhang G, Lan Y, Xiao Y, Li X.

Brief Bioinform. 2017 Mar 1;18(2):236-249. doi: 10.1093/bib/bbw015.

PMID:
26944085
7.

LncRBase: an enriched resource for lncRNA information.

Chakraborty S, Deb A, Maji RK, Saha S, Ghosh Z.

PLoS One. 2014 Sep 18;9(9):e108010. doi: 10.1371/journal.pone.0108010. eCollection 2014.

8.

AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification.

Dai L, Tian M, Wu J, Xiao J, Wang X, Townsend JP, Zhang Z.

Bioinformatics. 2013 Jul 15;29(14):1837-9. doi: 10.1093/bioinformatics/btt284. Epub 2013 Jun 3.

9.

Characterization and identification of long non-coding RNAs based on feature relationship.

Wang G, Yin H, Li B, Yu C, Wang F, Xu X, Cao J, Bao Y, Wang L, Abbasi AA, Bajic VB, Ma L, Zhang Z.

Bioinformatics. 2019 Sep 1;35(17):2949-2956. doi: 10.1093/bioinformatics/btz008.

PMID:
30649200
10.

Co-LncRNA: investigating the lncRNA combinatorial effects in GO annotations and KEGG pathways based on human RNA-Seq data.

Zhao Z, Bai J, Wu A, Wang Y, Zhang J, Wang Z, Li Y, Xu J, Li X.

Database (Oxford). 2015 Sep 10;2015. pii: bav082. doi: 10.1093/database/bav082. Print 2015.

11.

Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers.

Ning S, Zhang J, Wang P, Zhi H, Wang J, Liu Y, Gao Y, Guo M, Yue M, Wang L, Li X.

Nucleic Acids Res. 2016 Jan 4;44(D1):D980-5. doi: 10.1093/nar/gkv1094. Epub 2015 Oct 19.

12.

Roles of long noncoding RNAs in brain development, functional diversification and neurodegenerative diseases.

Wu P, Zuo X, Deng H, Liu X, Liu L, Ji A.

Brain Res Bull. 2013 Aug;97:69-80. doi: 10.1016/j.brainresbull.2013.06.001. Epub 2013 Jun 10. Review.

PMID:
23756188
13.

BmncRNAdb: a comprehensive database of non-coding RNAs in the silkworm, Bombyx mori.

Zhou QZ, Zhang B, Yu QY, Zhang Z.

BMC Bioinformatics. 2016 Sep 13;17(1):370. doi: 10.1186/s12859-016-1251-y.

14.

LncRNAnet: a comprehensive Sus scrofa lncRNA database.

Liang G, Yang Y, Li H, Yu H, Li X, Tang Z, Li K.

Anim Genet. 2018 Dec;49(6):632-635. doi: 10.1111/age.12720. Epub 2018 Oct 2.

PMID:
30276831
15.

CANTATAdb 2.0: Expanding the Collection of Plant Long Noncoding RNAs.

Szcześniak MW, Bryzghalov O, Ciomborowska-Basheer J, Makałowska I.

Methods Mol Biol. 2019;1933:415-429. doi: 10.1007/978-1-4939-9045-0_26.

PMID:
30945201
16.

Ontological function annotation of long non-coding RNAs through hierarchical multi-label classification.

Zhang J, Zhang Z, Wang Z, Liu Y, Deng L.

Bioinformatics. 2018 May 15;34(10):1750-1757. doi: 10.1093/bioinformatics/btx833.

PMID:
29293953
17.

CRlncRNA: a manually curated database of cancer-related long non-coding RNAs with experimental proof of functions on clinicopathological and molecular features.

Wang J, Zhang X, Chen W, Li J, Liu C.

BMC Med Genomics. 2018 Dec 31;11(Suppl 6):114. doi: 10.1186/s12920-018-0430-2.

18.

zflncRNApedia: A Comprehensive Online Resource for Zebrafish Long Non-Coding RNAs.

Dhiman H, Kapoor S, Sivadas A, Sivasubbu S, Scaria V.

PLoS One. 2015 Jun 11;10(6):e0129997. doi: 10.1371/journal.pone.0129997. eCollection 2015.

19.

PLNlncRbase: A resource for experimentally identified lncRNAs in plants.

Xuan H, Zhang L, Liu X, Han G, Li J, Li X, Liu A, Liao M, Zhang S.

Gene. 2015 Dec 1;573(2):328-32. doi: 10.1016/j.gene.2015.07.069. Epub 2015 Jul 23.

PMID:
26211629
20.

NONCODE v3.0: integrative annotation of long noncoding RNAs.

Bu D, Yu K, Sun S, Xie C, Skogerbø G, Miao R, Xiao H, Liao Q, Luo H, Zhao G, Zhao H, Liu Z, Liu C, Chen R, Zhao Y.

Nucleic Acids Res. 2012 Jan;40(Database issue):D210-5. doi: 10.1093/nar/gkr1175. Epub 2011 Dec 1.

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