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Items: 1 to 20 of 99

1.

Analytical results for a generalized model of bursty gene expression with molecular memory.

Qiu H, Zhang B, Zhou T.

Phys Rev E. 2019 Jul;100(1-1):012128. doi: 10.1103/PhysRevE.100.012128.

PMID:
31499786
2.

Limits of the memory coefficient in measuring correlated bursts.

Jo HH, Hiraoka T.

Phys Rev E. 2018 Mar;97(3-1):032121. doi: 10.1103/PhysRevE.97.032121.

PMID:
29776030
3.

Intrinsic noise in stochastic models of gene expression with molecular memory and bursting.

Jia T, Kulkarni RV.

Phys Rev Lett. 2011 Feb 4;106(5):058102. Epub 2011 Feb 2.

PMID:
21405439
4.

Stationary moments, distribution conjugation and phenotypic regions in stochastic gene transcription.

Zhang JJ, Zhou TS.

Math Biosci Eng. 2019 Jul 3;16(5):6134-6166. doi: 10.3934/mbe.2019307.

5.

Effect of reaction-step-size noise on the switching dynamics of stochastic populations.

Be'er S, Heller-Algazi M, Assaf M.

Phys Rev E. 2016 May;93(5):052117. doi: 10.1103/PhysRevE.93.052117. Epub 2016 May 9. Erratum in: Phys Rev E. 2016 Jul;94(1-2):019901.

PMID:
27300840
6.

Time-dependent solutions for a stochastic model of gene expression with molecule production in the form of a compound Poisson process.

Jędrak J, Ochab-Marcinek A.

Phys Rev E. 2016 Sep;94(3-1):032401. Epub 2016 Sep 1.

PMID:
27739798
7.

Connecting protein and mRNA burst distributions for stochastic models of gene expression.

Elgart V, Jia T, Fenley AT, Kulkarni R.

Phys Biol. 2011 Aug;8(4):046001. doi: 10.1088/1478-3975/8/4/046001. Epub 2011 Apr 13.

PMID:
21490380
8.

Hierarchical burst model for complex bursty dynamics.

Lee BH, Jung WS, Jo HH.

Phys Rev E. 2018 Aug;98(2-1):022316. doi: 10.1103/PhysRevE.98.022316.

PMID:
30253546
9.

Exact distributions for stochastic gene expression models with bursting and feedback.

Kumar N, Platini T, Kulkarni RV.

Phys Rev Lett. 2014 Dec 31;113(26):268105. Epub 2014 Dec 31.

PMID:
25615392
10.

Modulation of first-passage time for bursty gene expression via random signals.

Li Q, Huang L, Yu J.

Math Biosci Eng. 2017 Oct/Dec 1;14(5-6):1261-1277. doi: 10.3934/mbe.2017065.

11.

MicroRNA based feedforward control of intrinsic gene expression noise.

Bokes P, Hojcka M, Singh A.

IEEE/ACM Trans Comput Biol Bioinform. 2019 Aug 30. doi: 10.1109/TCBB.2019.2938502. [Epub ahead of print]

PMID:
31484129
12.

Memory and burstiness in dynamic networks.

Colman ER, Vukadinović Greetham D.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jul;92(1):012817. Epub 2015 Jul 24.

PMID:
26274235
13.

Frequency modulation of stochastic gene expression bursts by strongly interacting small RNAs.

Kumar N, Jia T, Zarringhalam K, Kulkarni RV.

Phys Rev E. 2016 Oct;94(4-1):042419. Epub 2016 Oct 24.

PMID:
27841647
14.

Generic schemes for single-molecule kinetics. 1: Self-consistent pathway solutions for renewal processes.

Cao J, Silbey RJ.

J Phys Chem B. 2008 Oct 16;112(41):12867-80. doi: 10.1021/jp803347m. Epub 2008 Sep 25.

PMID:
18816095
15.

Transcription stochasticity of complex gene regulation models.

Schwabe A, Rybakova KN, Bruggeman FJ.

Biophys J. 2012 Sep 19;103(6):1152-61. doi: 10.1016/j.bpj.2012.07.011.

16.

Beyond initiation-limited translational bursting: the effects of burst size distributions on the stability of gene expression.

Kuwahara H, Arold ST, Gao X.

Integr Biol (Camb). 2015 Dec;7(12):1622-32. doi: 10.1039/c5ib00107b. Epub 2015 Nov 13.

PMID:
26566069
17.

Copula-based algorithm for generating bursty time series.

Jo HH, Lee BH, Hiraoka T, Jung WS.

Phys Rev E. 2019 Aug;100(2-1):022307. doi: 10.1103/PhysRevE.100.022307.

PMID:
31574731
18.

Effects of promoter leakage on dynamics of gene expression.

Huang L, Yuan Z, Liu P, Zhou T.

BMC Syst Biol. 2015 Mar 21;9:16. doi: 10.1186/s12918-015-0157-z.

19.

Priority queues with bursty arrivals of incoming tasks.

Masuda N, Kim JS, Kahng B.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Mar;79(3 Pt 2):036106. Epub 2009 Mar 16.

PMID:
19392017
20.

Optimized reduction of uncertainty in bursty human dynamics.

Jo HH, Moon E, Kaski K.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Jan;85(1 Pt 2):016102. Epub 2012 Jan 5.

PMID:
22400620

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