Similar articles for PMID: 31481014

Year	Number of Results
2007	2
2009	3
2010	3
2011	2
2012	2
2013	6
2014	2
2015	5
2016	12
2017	13
2018	11
2019	11
2020	5
2021	8
2022	2
2023	1
2024	0

1

NPA: an R package for computing network perturbation amplitudes using gene expression data and two-layer networks.

Martin F, Gubian S, Talikka M, Hoeng J, Peitsch MC. Martin F, et al. BMC Bioinformatics. 2019 Sep 3;20(1):451. doi: 10.1186/s12859-019-3016-x. BMC Bioinformatics. 2019. PMID: 31481014 Free PMC article.

2

wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool.

Gysi DM, Voigt A, Fragoso TM, Almaas E, Nowick K. Gysi DM, et al. BMC Bioinformatics. 2018 Oct 24;19(1):392. doi: 10.1186/s12859-018-2351-7. BMC Bioinformatics. 2018. PMID: 30355288 Free PMC article.

3

CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data.

Zheng G, Xu Y, Zhang X, Liu ZP, Wang Z, Chen L, Zhu XG. Zheng G, et al. BMC Bioinformatics. 2016 Dec 23;17(Suppl 17):535. doi: 10.1186/s12859-016-1324-y. BMC Bioinformatics. 2016. PMID: 28155637 Free PMC article.

4

lionessR: single sample network inference in R.

Kuijjer ML, Hsieh PH, Quackenbush J, Glass K. Kuijjer ML, et al. BMC Cancer. 2019 Oct 25;19(1):1003. doi: 10.1186/s12885-019-6235-7. BMC Cancer. 2019. PMID: 31653243 Free PMC article.

5

BoolFilter: an R package for estimation and identification of partially-observed Boolean dynamical systems.

Mcclenny LD, Imani M, Braga-Neto UM. Mcclenny LD, et al. BMC Bioinformatics. 2017 Nov 25;18(1):519. doi: 10.1186/s12859-017-1886-3. BMC Bioinformatics. 2017. PMID: 29178844 Free PMC article.

6

Assessment of network perturbation amplitudes by applying high-throughput data to causal biological networks.

Martin F, Thomson TM, Sewer A, Drubin DA, Mathis C, Weisensee D, Pratt D, Hoeng J, Peitsch MC. Martin F, et al. BMC Syst Biol. 2012 May 31;6:54. doi: 10.1186/1752-0509-6-54. BMC Syst Biol. 2012. PMID: 22651900 Free PMC article.

7

EpiTracer - an algorithm for identifying epicenters in condition-specific biological networks.

Sambaturu N, Mishra M, Chandra N. Sambaturu N, et al. BMC Genomics. 2016 Aug 18;17 Suppl 4(Suppl 4):543. doi: 10.1186/s12864-016-2792-1. BMC Genomics. 2016. PMID: 27556637 Free PMC article.

8

Quantification of biological network perturbations for mechanistic insight and diagnostics using two-layer causal models.

Martin F, Sewer A, Talikka M, Xiang Y, Hoeng J, Peitsch MC. Martin F, et al. BMC Bioinformatics. 2014 Jul 11;15:238. doi: 10.1186/1471-2105-15-238. BMC Bioinformatics. 2014. PMID: 25015298 Free PMC article.

9

Gene regulatory networks on transfer entropy (GRNTE): a novel approach to reconstruct gene regulatory interactions applied to a case study for the plant pathogen Phytophthora infestans.

Castro JC, Valdés I, Gonzalez-García LN, Danies G, Cañas S, Winck FV, Ñústez CE, Restrepo S, Riaño-Pachón DM. Castro JC, et al. Theor Biol Med Model. 2019 Apr 9;16(1):7. doi: 10.1186/s12976-019-0103-7. Theor Biol Med Model. 2019. PMID: 30961611 Free PMC article.

10

Biological Network Inference and analysis using SEBINI and CABIN.

Taylor R, Singhal M. Taylor R, et al. Methods Mol Biol. 2009;541:551-76. doi: 10.1007/978-1-59745-243-4_24. Methods Mol Biol. 2009. PMID: 19381531 Review.

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