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Items: 1 to 20 of 93

1.

Genome Sequence of Bacillus subtilis natto VK161, a Novel Strain That Produces Vitamin K2.

Parks D, Chung IH, Lee IK, Kim EJ, Niraula S, Chang WS.

Microbiol Resour Announc. 2019 Aug 29;8(35). pii: e00444-19. doi: 10.1128/MRA.00444-19.

2.

Whole genome assembly of a natto production strain Bacillus subtilis natto from very short read data.

Nishito Y, Osana Y, Hachiya T, Popendorf K, Toyoda A, Fujiyama A, Itaya M, Sakakibara Y.

BMC Genomics. 2010 Apr 16;11:243. doi: 10.1186/1471-2164-11-243.

3.

Complete nucleotide sequence of Bacillus subtilis (natto) bacteriophage PM1, a phage associated with disruption of food production.

Umene K, Shiraishi A.

Virus Genes. 2013 Jun;46(3):524-34. doi: 10.1007/s11262-013-0876-4. Epub 2013 Jan 13.

PMID:
23315235
4.
5.

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes.

Mavromatis K, Ivanova NN, Chen IM, Szeto E, Markowitz VM, Kyrpides NC.

Stand Genomic Sci. 2009 Jul 20;1(1):63-7. doi: 10.4056/sigs.632.

6.

Characterization of Bacillus phage-K2 isolated from chungkookjang, a fermented soybean foodstuff.

Kim EJ, Hong JW, Yun NR, Lee YN.

J Ind Microbiol Biotechnol. 2011 Jan;38(1):39-42. doi: 10.1007/s10295-010-0825-3. Epub 2010 Sep 5.

PMID:
20820867
7.

Whole genome complete resequencing of Bacillus subtilis natto by combining long reads with high-quality short reads.

Kamada M, Hase S, Sato K, Toyoda A, Fujiyama A, Sakakibara Y.

PLoS One. 2014 Oct 16;9(10):e109999. doi: 10.1371/journal.pone.0109999. eCollection 2014.

8.

[Whole Genome Sequence Determination and Analysis of Bacillus Subtilis Strain CGMCC 12426].

Dong H, Li XH, Chang JL, He X, Hou QL, Long W.

Zhongguo Yi Xue Ke Xue Yuan Xue Bao. 2019 Jun 30;41(3):307-314. doi: 10.3881/j.issn.1000-503X.10370. Chinese.

9.

Comparative analysis of physical maps of four Bacillus subtilis (natto) genomes.

Qiu D, Fujita K, Sakuma Y, Tanaka T, Ohashi Y, Ohshima H, Tomita M, Itaya M.

Appl Environ Microbiol. 2004 Oct;70(10):6247-56.

11.

Genome annotation and comparative genomic analysis of Bacillus subtilis MJ01, a new bio-degradation strain isolated from oil-contaminated soil.

Rahimi T, Niazi A, Deihimi T, Taghavi SM, Ayatollahi S, Ebrahimie E.

Funct Integr Genomics. 2018 Sep;18(5):533-543. doi: 10.1007/s10142-018-0604-1. Epub 2018 May 5.

PMID:
29730772
13.

Effects of Bacillus subtilis natto and Different Components in Culture on Rumen Fermentation and Rumen Functional Bacteria In Vitro.

Sun P, Li J, Bu D, Nan X, Du H.

Curr Microbiol. 2016 May;72(5):589-95. doi: 10.1007/s00284-016-0986-z. Epub 2016 Jan 28.

PMID:
26821238
14.

Phylogenetic analysis of Bacillus subtilis strains applicable to natto (fermented soybean) production.

Kubo Y, Rooney AP, Tsukakoshi Y, Nakagawa R, Hasegawa H, Kimura K.

Appl Environ Microbiol. 2011 Sep;77(18):6463-9. doi: 10.1128/AEM.00448-11. Epub 2011 Jul 15.

15.

Natural genetic competence in Bacillus subtilis natto OK2.

Ashikaga S, Nanamiya H, Ohashi Y, Kawamura F.

J Bacteriol. 2000 May;182(9):2411-5.

16.

The genome portal of the Department of Energy Joint Genome Institute.

Grigoriev IV, Nordberg H, Shabalov I, Aerts A, Cantor M, Goodstein D, Kuo A, Minovitsky S, Nikitin R, Ohm RA, Otillar R, Poliakov A, Ratnere I, Riley R, Smirnova T, Rokhsar D, Dubchak I.

Nucleic Acids Res. 2012 Jan;40(Database issue):D26-32. doi: 10.1093/nar/gkr947. Epub 2011 Nov 22.

17.

Functional myo-inositol catabolic genes of Bacillus subtilis Natto are involved in depletion of pinitol in Natto (fermented soybean).

Morinaga T, Yamaguchi M, Makino Y, Nanamiya H, Takahashi K, Yoshikawa H, Kawamura F, Ashida H, Yoshida K.

Biosci Biotechnol Biochem. 2006 Aug;70(8):1913-20. Epub 2006 Aug 1.

18.

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

Huntemann M, Ivanova NN, Mavromatis K, Tripp HJ, Paez-Espino D, Palaniappan K, Szeto E, Pillay M, Chen IM, Pati A, Nielsen T, Markowitz VM, Kyrpides NC.

Stand Genomic Sci. 2015 Oct 26;10:86. doi: 10.1186/s40793-015-0077-y. eCollection 2015. Erratum in: Stand Genomic Sci. 2016;11:27.

19.

DNA sequence of Bacillus subtilis (natto) NR-1 gamma-glutamyltranspeptidase gene, ggt.

Ogawa Y, Sugiura D, Motai H, Yuasa K, Tahara Y.

Biosci Biotechnol Biochem. 1997 Sep;61(9):1596-600.

20.

The genome portal of the Department of Energy Joint Genome Institute: 2014 updates.

Nordberg H, Cantor M, Dusheyko S, Hua S, Poliakov A, Shabalov I, Smirnova T, Grigoriev IV, Dubchak I.

Nucleic Acids Res. 2014 Jan;42(Database issue):D26-31. doi: 10.1093/nar/gkt1069. Epub 2013 Nov 12.

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