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Items: 1 to 20 of 101

1.

Immuno-SABER enables highly multiplexed and amplified protein imaging in tissues.

Saka SK, Wang Y, Kishi JY, Zhu A, Zeng Y, Xie W, Kirli K, Yapp C, Cicconet M, Beliveau BJ, Lapan SW, Yin S, Lin M, Boyden ES, Kaeser PS, Pihan G, Church GM, Yin P.

Nat Biotechnol. 2019 Sep;37(9):1080-1090. doi: 10.1038/s41587-019-0207-y. Epub 2019 Aug 19.

PMID:
31427819
2.

SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues.

Kishi JY, Lapan SW, Beliveau BJ, West ER, Zhu A, Sasaki HM, Saka SK, Wang Y, Cepko CL, Yin P.

Nat Methods. 2019 Jun;16(6):533-544. doi: 10.1038/s41592-019-0404-0. Epub 2019 May 20.

PMID:
31110282
3.

Rapid Sequential in Situ Multiplexing with DNA Exchange Imaging in Neuronal Cells and Tissues.

Wang Y, Woehrstein JB, Donoghue N, Dai M, Avendaño MS, Schackmann RCJ, Zoeller JJ, Wang SSH, Tillberg PW, Park D, Lapan SW, Boyden ES, Brugge JS, Kaeser PS, Church GM, Agasti SS, Jungmann R, Yin P.

Nano Lett. 2017 Oct 11;17(10):6131-6139. doi: 10.1021/acs.nanolett.7b02716. Epub 2017 Oct 2.

4.

Mapping a multiplexed zoo of mRNA expression.

Choi HM, Calvert CR, Husain N, Huss D, Barsi JC, Deverman BE, Hunter RC, Kato M, Lee SM, Abelin AC, Rosenthal AZ, Akbari OS, Li Y, Hay BA, Sternberg PW, Patterson PH, Davidson EH, Mazmanian SK, Prober DA, van de Rijn M, Leadbetter JR, Newman DK, Readhead C, Bronner ME, Wold B, Lansford R, Sauka-Spengler T, Fraser SE, Pierce NA.

Development. 2016 Oct 1;143(19):3632-3637.

5.

DNA-barcoded labeling probes for highly multiplexed Exchange-PAINT imaging.

Agasti SS, Wang Y, Schueder F, Sukumar A, Jungmann R, Yin P.

Chem Sci. 2017 Apr 1;8(4):3080-3091. doi: 10.1039/c6sc05420j. Epub 2017 Jan 30.

6.

Multiplexed 3D cellular super-resolution imaging with DNA-PAINT and Exchange-PAINT.

Jungmann R, Avendaño MS, Woehrstein JB, Dai M, Shih WM, Yin P.

Nat Methods. 2014 Mar;11(3):313-8. doi: 10.1038/nmeth.2835. Epub 2014 Feb 2.

7.

Programmable in situ amplification for multiplexed imaging of mRNA expression.

Choi HM, Chang JY, Trinh le A, Padilla JE, Fraser SE, Pierce NA.

Nat Biotechnol. 2010 Nov;28(11):1208-12. doi: 10.1038/nbt.1692. Epub 2010 Oct 31.

8.

Multiplexed miRNA fluorescence in situ hybridization for formalin-fixed paraffin-embedded tissues.

Renwick N, Cekan P, Bognanni C, Tuschl T.

Methods Mol Biol. 2014;1211:171-87. doi: 10.1007/978-1-4939-1459-3_14.

9.

Universal Super-Resolution Multiplexing by DNA Exchange.

Schueder F, Strauss MT, Hoerl D, Schnitzbauer J, Schlichthaerle T, Strauss S, Yin P, Harz H, Leonhardt H, Jungmann R.

Angew Chem Int Ed Engl. 2017 Mar 27;56(14):4052-4055. doi: 10.1002/anie.201611729. Epub 2017 Mar 3.

10.

Large fragment Bst DNA polymerase for whole genome amplification of DNA from formalin-fixed paraffin-embedded tissues.

Aviel-Ronen S, Qi Zhu C, Coe BP, Liu N, Watson SK, Lam WL, Tsao MS.

BMC Genomics. 2006 Dec 12;7:312.

11.

Nanobody Detection of Standard Fluorescent Proteins Enables Multi-Target DNA-PAINT with High Resolution and Minimal Displacement Errors.

Sograte-Idrissi S, Oleksiievets N, Isbaner S, Eggert-Martinez M, Enderlein J, Tsukanov R, Opazo F.

Cells. 2019 Jan 14;8(1). pii: E48. doi: 10.3390/cells8010048.

12.

Evaluation of DNA extraction methods and real time PCR optimization on formalin-fixed paraffin-embedded tissues.

Dedhia P, Tarale S, Dhongde G, Khadapkar R, Das B.

Asian Pac J Cancer Prev. 2007 Jan-Mar;8(1):55-9.

13.

Highly multiplexed single-cell analysis of formalin-fixed, paraffin-embedded cancer tissue.

Gerdes MJ, Sevinsky CJ, Sood A, Adak S, Bello MO, Bordwell A, Can A, Corwin A, Dinn S, Filkins RJ, Hollman D, Kamath V, Kaanumalle S, Kenny K, Larsen M, Lazare M, Li Q, Lowes C, McCulloch CC, McDonough E, Montalto MC, Pang Z, Rittscher J, Santamaria-Pang A, Sarachan BD, Seel ML, Seppo A, Shaikh K, Sui Y, Zhang J, Ginty F.

Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):11982-7. doi: 10.1073/pnas.1300136110. Epub 2013 Jul 1.

14.

Three dimensional dual labelled DNA fluorescent in situ hybridization analysis in fixed tissue sections.

Kernohan KD, Bérubé NG.

MethodsX. 2014 May 9;1:30-5. doi: 10.1016/j.mex.2014.04.001. eCollection 2014.

16.

Next-generation in situ hybridization chain reaction: higher gain, lower cost, greater durability.

Choi HM, Beck VA, Pierce NA.

ACS Nano. 2014 May 27;8(5):4284-94. doi: 10.1021/nn405717p. Epub 2014 Apr 8.

17.

Enzymatically amplified mass tags for tissue mass spectrometry imaging.

Hong R, True J, Bieniarz C.

Anal Chem. 2014 Feb 4;86(3):1459-67. doi: 10.1021/ac402718f. Epub 2014 Jan 23.

PMID:
24410597
18.

Quantification of HER2 by Targeted Mass Spectrometry in Formalin-Fixed Paraffin-Embedded (FFPE) Breast Cancer Tissues.

Steiner C, Tille JC, Lamerz J, Kux van Geijtenbeek S, McKee TA, Venturi M, Rubbia-Brandt L, Hochstrasser D, Cutler P, Lescuyer P, Ducret A.

Mol Cell Proteomics. 2015 Oct;14(10):2786-99. doi: 10.1074/mcp.O115.049049. Epub 2015 Jul 6.

19.

Highly multiplexed immunofluorescence imaging of human tissues and tumors using t-CyCIF and conventional optical microscopes.

Lin JR, Izar B, Wang S, Yapp C, Mei S, Shah PM, Santagata S, Sorger PK.

Elife. 2018 Jul 11;7. pii: e31657. doi: 10.7554/eLife.31657.

20.

State-of-the-Art of Profiling Immune Contexture in the Era of Multiplexed Staining and Digital Analysis to Study Paraffin Tumor Tissues.

Parra ER, Francisco-Cruz A, Wistuba II.

Cancers (Basel). 2019 Feb 20;11(2). pii: E247. doi: 10.3390/cancers11020247. Review.

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