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ncRNA-eQTL: a database to systematically evaluate the effects of SNPs on non-coding RNA expression across cancer types.

Li J, Xue Y, Amin MT, Yang Y, Yang J, Zhang W, Yang W, Niu X, Zhang HY, Gong J. Li J, et al. Nucleic Acids Res. 2020 Jan 8;48(D1):D956-D963. doi: 10.1093/nar/gkz711. Nucleic Acids Res. 2020. PMID: 31410488 Free PMC article.

PancanQTL: systematic identification of cis-eQTLs and trans-eQTLs in 33 cancer types.

Gong J, Mei S, Liu C, Xiang Y, Ye Y, Zhang Z, Feng J, Liu R, Diao L, Guo AY, Miao X, Han L. Gong J, et al. Nucleic Acids Res. 2018 Jan 4;46(D1):D971-D976. doi: 10.1093/nar/gkx861. Nucleic Acids Res. 2018. PMID: 29036324 Free PMC article.

Systematic evaluation of the effects of genetic variants on PIWI-interacting RNA expression across 33 cancer types.

Xin J, Du M, Jiang X, Wu Y, Ben S, Zheng R, Chu H, Li S, Zhang Z, Wang M. Xin J, et al. Nucleic Acids Res. 2021 Jan 11;49(1):90-97. doi: 10.1093/nar/gkaa1190. Nucleic Acids Res. 2021. PMID: 33330918 Free PMC article.

Expression Quantitative Trait Loci (eQTL) Analysis in Cancer.

Liu Y, Ye Y, Gong J, Han L. Liu Y, et al. Methods Mol Biol. 2020;2082:189-199. doi: 10.1007/978-1-0716-0026-9_13. Methods Mol Biol. 2020. PMID: 31849016

JAMIR-eQTL: Japanese genome-wide identification of microRNA expression quantitative trait loci across dementia types.

Akiyama S, Higaki S, Ochiya T, Ozaki K, Niida S, Shigemizu D. Akiyama S, et al. Database (Oxford). 2021 Nov 3;2021(2021):baab072. doi: 10.1093/database/baab072. Database (Oxford). 2021. PMID: 34730175 Free PMC article.

Integrated genome-wide analysis of expression quantitative trait loci aids interpretation of genomic association studies.

Joehanes R, Zhang X, Huan T, Yao C, Ying SX, Nguyen QT, Demirkale CY, Feolo ML, Sharopova NR, Sturcke A, Schäffer AA, Heard-Costa N, Chen H, Liu PC, Wang R, Woodhouse KA, Tanriverdi K, Freedman JE, Raghavachari N, Dupuis J, Johnson AD, O'Donnell CJ, Levy D, Munson PJ. Joehanes R, et al. Genome Biol. 2017 Jan 25;18(1):16. doi: 10.1186/s13059-016-1142-6. Genome Biol. 2017. PMID: 28122634 Free PMC article.

Trans-eQTLs identified in whole blood have limited influence on complex disease biology.

Yap CX, Lloyd-Jones L, Holloway A, Smartt P, Wray NR, Gratten J, Powell JE. Yap CX, et al. Eur J Hum Genet. 2018 Sep;26(9):1361-1368. doi: 10.1038/s41431-018-0174-7. Epub 2018 Jun 11. Eur J Hum Genet. 2018. PMID: 29891877 Free PMC article.

SNP eQTL status and eQTL density in the adjacent region of the SNP are associated with its statistical significance in GWA studies.

Gorlov I, Xiao X, Mayes M, Gorlova O, Amos C. Gorlov I, et al. BMC Genet. 2019 Nov 12;20(1):85. doi: 10.1186/s12863-019-0786-0. BMC Genet. 2019. PMID: 31718536 Free PMC article.

DNA methylation and cis-regulation of gene expression by prostate cancer risk SNPs.

Dai JY, Wang X, Wang B, Sun W, Jordahl KM, Kolb S, Nyame YA, Wright JL, Ostrander EA, Feng Z, Stanford JL. Dai JY, et al. PLoS Genet. 2020 Mar 30;16(3):e1008667. doi: 10.1371/journal.pgen.1008667. eCollection 2020 Mar. PLoS Genet. 2020. PMID: 32226005 Free PMC article.

ncRPheno: a comprehensive database platform for identification and validation of disease related noncoding RNAs.

Zhang W, Yao G, Wang J, Yang M, Wang J, Zhang H, Li W. Zhang W, et al. RNA Biol. 2020 Jul;17(7):943-955. doi: 10.1080/15476286.2020.1737441. Epub 2020 Mar 26. RNA Biol. 2020. PMID: 32122231 Free PMC article.

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