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Items: 1 to 20 of 101

1.

High proportions of bacteria and archaea across most biomes remain uncultured.

Steen AD, Crits-Christoph A, Carini P, DeAngelis KM, Fierer N, Lloyd KG, Cameron Thrash J.

ISME J. 2019 Aug 6. doi: 10.1038/s41396-019-0484-y. [Epub ahead of print]

PMID:
31388130
2.

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences.

Yarza P, Yilmaz P, Pruesse E, Glöckner FO, Ludwig W, Schleifer KH, Whitman WB, Euzéby J, Amann R, Rosselló-Móra R.

Nat Rev Microbiol. 2014 Sep;12(9):635-45. doi: 10.1038/nrmicro3330. Review.

PMID:
25118885
3.

Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem.

Louca S, Doebeli M, Parfrey LW.

Microbiome. 2018 Feb 26;6(1):41. doi: 10.1186/s40168-018-0420-9.

4.

Bacteria and Archaea diversity within the hot springs of Lake Magadi and Little Magadi in Kenya.

Kambura AK, Mwirichia RK, Kasili RW, Karanja EN, Makonde HM, Boga HI.

BMC Microbiol. 2016 Jul 7;16(1):136. doi: 10.1186/s12866-016-0748-x.

5.

Community analysis of a full-scale anaerobic bioreactor treating paper mill wastewater.

Roest K, Heilig HG, Smidt H, de Vos WM, Stams AJ, Akkermans AD.

Syst Appl Microbiol. 2005 Mar;28(2):175-85.

PMID:
15830810
6.

High proportions of bacteria are culturable across major biomes.

Martiny AC.

ISME J. 2019 Aug;13(8):2125-2128. doi: 10.1038/s41396-019-0410-3. Epub 2019 Apr 5.

PMID:
30952994
7.

Bacterial and archaeal phylogenetic diversity of a cold sulfur-rich spring on the shoreline of Lake Erie, Michigan.

Chaudhary A, Haack SK, Duris JW, Marsh TL.

Appl Environ Microbiol. 2009 Aug;75(15):5025-36. doi: 10.1128/AEM.00112-09. Epub 2009 Jun 19.

8.

Bacterial and archaeal communities in the acid pit lake sediments of a chalcopyrite mine.

Lucheta AR, Otero XL, Macías F, Lambais MR.

Extremophiles. 2013 Nov;17(6):941-51. doi: 10.1007/s00792-013-0576-y. Epub 2013 Aug 21.

PMID:
23963670
9.

Distribution of prokaryotic genetic diversity in athalassohaline lakes of the Atacama Desert, Northern Chile.

Demergasso C, Casamayor EO, Chong G, Galleguillos P, Escudero L, Pedrós-Alió C.

FEMS Microbiol Ecol. 2004 Apr 1;48(1):57-69. doi: 10.1016/j.femsec.2003.12.013.

10.

Pangenome evidence for extensive interdomain horizontal transfer affecting lineage core and shell genes in uncultured planktonic thaumarchaeota and euryarchaeota.

Deschamps P, Zivanovic Y, Moreira D, Rodriguez-Valera F, López-García P.

Genome Biol Evol. 2014 Jun 12;6(7):1549-63. doi: 10.1093/gbe/evu127.

11.

Status of the Archaeal and Bacterial Census: an Update.

Schloss PD, Girard RA, Martin T, Edwards J, Thrash JC.

MBio. 2016 May 17;7(3). pii: e00201-16. doi: 10.1128/mBio.00201-16.

12.

Life without light: microbial diversity and evidence of sulfur- and ammonium-based chemolithotrophy in Movile Cave.

Chen Y, Wu L, Boden R, Hillebrand A, Kumaresan D, Moussard H, Baciu M, Lu Y, Colin Murrell J.

ISME J. 2009 Sep;3(9):1093-104. doi: 10.1038/ismej.2009.57. Epub 2009 May 28.

PMID:
19474813
13.
14.

Uncultured Archaea in a hydrothermal microbial assemblage: phylogenetic diversity and characterization of a genome fragment from a euryarchaeote.

Moussard H, Moreira D, Cambon-Bonavita MA, López-García P, Jeanthon C.

FEMS Microbiol Ecol. 2006 Sep;57(3):452-69.

15.

[Prokaryotic microbial diversity of the ancient salt deposits in the Kunming Salt Mine, P.R. China].

Xiao W, Peng Q, Liu HW, Wen ML, Cui XL, Yang YL, Duan DC, Chen W, Deng L, Li QY, Chen YG, Wang ZG, Ren Z, Liu JH.

Wei Sheng Wu Xue Bao. 2007 Apr;47(2):295-300. Chinese.

PMID:
17552238
16.

Patterns of microbial diversity along a salinity gradient in the Guerrero Negro solar saltern, Baja CA Sur, Mexico.

Dillon JG, Carlin M, Gutierrez A, Nguyen V, McLain N.

Front Microbiol. 2013 Dec 20;4:399. doi: 10.3389/fmicb.2013.00399. eCollection 2013.

17.

Comparative analysis of archaeal 16S rRNA and amoA genes to estimate the abundance and diversity of ammonia-oxidizing archaea in marine sediments.

Park SJ, Park BJ, Rhee SK.

Extremophiles. 2008 Jul;12(4):605-15. doi: 10.1007/s00792-008-0165-7. Epub 2008 May 9.

PMID:
18465082
18.

Unique clusters of Archaea in Salar de Huasco, an athalassohaline evaporitic basin of the Chilean Altiplano.

Dorador C, Vila I, Remonsellez F, Imhoff JF, Witzel KP.

FEMS Microbiol Ecol. 2010 Aug;73(2):291-302. doi: 10.1111/j.1574-6941.2010.00891.x. Epub 2010 Apr 19.

19.

Design of 16S rRNA-targeted oligonucleotide probes for detecting cultured and uncultured archaeal lineages in high-temperature environments.

Nercessian O, Prokofeva M, Lebedinski A, L'Haridon S, Cary C, Prieur D, Jeanthon C.

Environ Microbiol. 2004 Feb;6(2):170-82.

PMID:
14756881
20.

Novel and unexpected prokaryotic diversity in water and sediments of the alkaline, hypersaline lakes of the Wadi An Natrun, Egypt.

Mesbah NM, Abou-El-Ela SH, Wiegel J.

Microb Ecol. 2007 Nov;54(4):598-617. Epub 2007 Apr 21. Erratum in: Microb Ecol. 2008 Feb;55(2):369.

PMID:
17450395

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