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Items: 1 to 20 of 102

1.

Biotea-2-Bioschemas, facilitating structured markup for semantically annotated scholarly publications.

Garcia L, Giraldo O, Garcia A, Rebholz-Schuhmann D.

Genomics Inform. 2019 Jun;17(2):e14. doi: 10.5808/GI.2019.17.2.e14. Epub 2019 Jun 19.

2.

Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data.

Garcia Castro LJ, McLaughlin C, Garcia A.

J Biomed Semantics. 2013 Apr 15;4 Suppl 1:S5. doi: 10.1186/2041-1480-4-S1-S5. Epub 2013 Apr 15.

3.

PaperBot: open-source web-based search and metadata organization of scientific literature.

Maraver P, Armañanzas R, Gillette TA, Ascoli GA.

BMC Bioinformatics. 2019 Jan 24;20(1):50. doi: 10.1186/s12859-019-2613-z.

4.

Development of health information search engine based on metadata and ontology.

Song TM, Park HA, Jin DL.

Healthc Inform Res. 2014 Apr;20(2):88-98. doi: 10.4258/hir.2014.20.2.88. Epub 2014 Apr 30.

5.

ODMedit: uniform semantic annotation for data integration in medicine based on a public metadata repository.

Dugas M, Meidt A, Neuhaus P, Storck M, Varghese J.

BMC Med Res Methodol. 2016 Jun 1;16:65. doi: 10.1186/s12874-016-0164-9.

6.

Adventures in semantic publishing: exemplar semantic enhancements of a research article.

Shotton D, Portwin K, Klyne G, Miles A.

PLoS Comput Biol. 2009 Apr;5(4):e1000361. doi: 10.1371/journal.pcbi.1000361. Epub 2009 Apr 17.

7.

An ontology-based search engine for digital reconstructions of neuronal morphology.

Polavaram S, Ascoli GA.

Brain Inform. 2017 Jun;4(2):123-134. doi: 10.1007/s40708-017-0062-x. Epub 2017 Mar 23.

8.

DATS, the data tag suite to enable discoverability of datasets.

Sansone SA, Gonzalez-Beltran A, Rocca-Serra P, Alter G, Grethe JS, Xu H, Fore IM, Lyle J, Gururaj AE, Chen X, Kim HE, Zong N, Li Y, Liu R, Ozyurt IB, Ohno-Machado L.

Sci Data. 2017 Jun 6;4:170059. doi: 10.1038/sdata.2017.59.

9.

Mining the pharmacogenomics literature--a survey of the state of the art.

Hahn U, Cohen KB, Garten Y, Shah NH.

Brief Bioinform. 2012 Jul;13(4):460-94. doi: 10.1093/bib/bbs018.

10.

linkedISA: semantic representation of ISA-Tab experimental metadata.

González-Beltrán A, Maguire E, Sansone SA, Rocca-Serra P.

BMC Bioinformatics. 2014;15 Suppl 14:S4. doi: 10.1186/1471-2105-15-S14-S4. Epub 2014 Nov 27.

11.

Biotea: semantics for Pubmed Central.

Garcia A, Lopez F, Garcia L, Giraldo O, Bucheli V, Dumontier M.

PeerJ. 2018 Jan 2;6:e4201. doi: 10.7717/peerj.4201. eCollection 2018.

12.

An open annotation ontology for science on web 3.0.

Ciccarese P, Ocana M, Garcia Castro LJ, Das S, Clark T.

J Biomed Semantics. 2011 May 17;2 Suppl 2:S4. doi: 10.1186/2041-1480-2-S2-S4.

14.

SATORI: a system for ontology-guided visual exploration of biomedical data repositories.

Lekschas F, Gehlenborg N.

Bioinformatics. 2018 Apr 1;34(7):1200-1207. doi: 10.1093/bioinformatics/btx739.

15.

A first look at HealthCyberMap medical semantic subject search engine.

Boulos MN.

Technol Health Care. 2004;12(1):33-41.

PMID:
15096685
16.

BIOMedical Search Engine Framework: Lightweight and customized implementation of domain-specific biomedical search engines.

Jácome AG, Fdez-Riverola F, Lourenço A.

Comput Methods Programs Biomed. 2016 Jul;131:63-77. doi: 10.1016/j.cmpb.2016.03.030. Epub 2016 Apr 8.

PMID:
27265049
17.

Textpresso Central: a customizable platform for searching, text mining, viewing, and curating biomedical literature.

Müller HM, Van Auken KM, Li Y, Sternberg PW.

BMC Bioinformatics. 2018 Mar 9;19(1):94. doi: 10.1186/s12859-018-2103-8.

18.

IML: An image markup language.

Lober WB, Trigg LJ, Bliss D, Brinkley JM.

Proc AMIA Symp. 2001:403-7.

19.

BioUSeR: a semantic-based tool for retrieving Life Science web resources driven by text-rich user requirements.

Pérez M, Berlanga R, Sanz I, Aramburu MJ.

J Biomed Semantics. 2013 May 1;4(1):12. doi: 10.1186/2041-1480-4-12.

20.

Semantic tagging of and semantic enhancements to systematics papers: ZooKeys working examples.

Penev L, Agosti D, Georgiev T, Catapano T, Miller J, Blagoderov V, Roberts D, Smith VS, Brake I, Ryrcroft S, Scott B, Johnson NF, Morris RA, Sautter G, Chavan V, Robertson T, Remsen D, Stoev P, Parr C, Knapp S, Kress WJ, Thompson CF, Erwin T.

Zookeys. 2010 Jun 30;(50):1-16. doi: 10.3897/zookeys.50.538.

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