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Genome-wide association mapping of leaf mass traits in a Vietnamese rice landrace panel.

Hoang GT, Gantet P, Nguyen KH, Phung NTP, Ha LT, Nguyen TT, Lebrun M, Courtois B, Pham XH.

PLoS One. 2019 Jul 8;14(7):e0219274. doi: 10.1371/journal.pone.0219274. eCollection 2019.


Genome-wide Association Study of a Panel of Vietnamese Rice Landraces Reveals New QTLs for Tolerance to Water Deficit During the Vegetative Phase.

Hoang GT, Van Dinh L, Nguyen TT, Ta NK, Gathignol F, Mai CD, Jouannic S, Tran KD, Khuat TH, Do VN, Lebrun M, Courtois B, Gantet P.

Rice (N Y). 2019 Jan 28;12(1):4. doi: 10.1186/s12284-018-0258-6.


A genome-wide association study using a Vietnamese landrace panel of rice (Oryza sativa) reveals new QTLs controlling panicle morphological traits.

Ta KN, Khong NG, Ha TL, Nguyen DT, Mai DC, Hoang TG, Phung TPN, Bourrie I, Courtois B, Tran TTH, Dinh BY, LA TN, DO NV, Lebrun M, Gantet P, Jouannic S.

BMC Plant Biol. 2018 Nov 14;18(1):282. doi: 10.1186/s12870-018-1504-1.


QTL analysis of novel genomic regions associated with yield and yield related traits in new plant type based recombinant inbred lines of rice (Oryza sativa L.).

Marathi B, Guleria S, Mohapatra T, Parsad R, Mariappan N, Kurungara VK, Atwal SS, Prabhu KV, Singh NK, Singh AK.

BMC Plant Biol. 2012 Aug 9;12:137. doi: 10.1186/1471-2229-12-137.


Genetic Dissection of Grain Nutritional Traits and Leaf Blight Resistance in Rice.

Descalsota-Empleo GI, Noraziyah AAS, Navea IP, Chung C, Dwiyanti MS, Labios RJD, Ikmal AM, Juanillas VM, Inabangan-Asilo MA, Amparado A, Reinke R, Cruz CMV, Chin JH, Swamy BPM.

Genes (Basel). 2019 Jan 8;10(1). pii: E30. doi: 10.3390/genes10010030.


Genetic analysis of yield and agronomic traits under reproductive-stage drought stress in rice using a high-resolution linkage map.

Bhattarai U, Subudhi PK.

Gene. 2018 Aug 30;669:69-76. doi: 10.1016/j.gene.2018.05.086. Epub 2018 May 23.


Validation of Yield Component Traits Identified by Genome-Wide Association Mapping in a tropical japonica × tropical japonica Rice Biparental Mapping Population.

Eizenga GC, Jia MH, Jackson AK, Boykin DL, Ali ML, Shakiba E, Tran NT, McCouch SR, Edwards JD.

Plant Genome. 2019 Mar;12(1). doi: 10.3835/plantgenome2018.04.0021.


QTL mapping of root traits in a doubled haploid population from a cross between upland and lowland japonica rice in three environments.

Li Z, Mu P, Li C, Zhang H, Li Z, Gao Y, Wang X.

Theor Appl Genet. 2005 May;110(7):1244-52. Epub 2005 Mar 12.


Genetic Loci Governing Grain Yield and Root Development under Variable Rice Cultivation Conditions.

Catolos M, Sandhu N, Dixit S, Shamsudin NAA, Naredo MEB, McNally KL, Henry A, Diaz MG, Kumar A.

Front Plant Sci. 2017 Oct 16;8:1763. doi: 10.3389/fpls.2017.01763. eCollection 2017.


Enhanced Expression of QTL qLL9/DEP1 Facilitates the Improvement of Leaf Morphology and Grain Yield in Rice.

Fu X, Xu J, Zhou M, Chen M, Shen L, Li T, Zhu Y, Wang J, Hu J, Zhu L, Gao Z, Dong G, Guo L, Ren D, Chen G, Lin J, Qian Q, Zhang G.

Int J Mol Sci. 2019 Feb 17;20(4). pii: E866. doi: 10.3390/ijms20040866.


Traits and QTLs for development of dry direct-seeded rainfed rice varieties.

Sandhu N, Torres RO, Sta Cruz MT, Maturan PC, Jain R, Kumar A, Henry A.

J Exp Bot. 2015 Jan;66(1):225-44. doi: 10.1093/jxb/eru413. Epub 2014 Oct 21.


Quantitative trait locus mapping and candidate gene analysis for plant architecture traits using whole genome re-sequencing in rice.

Lim JH, Yang HJ, Jung KH, Yoo SC, Paek NC.

Mol Cells. 2014 Feb;37(2):149-60. doi: 10.14348/molcells.2014.2336. Epub 2014 Feb 19.


Molecular Dissection of Seedling Salinity Tolerance in Rice (Oryza sativa L.) Using a High-Density GBS-Based SNP Linkage Map.

De Leon TB, Linscombe S, Subudhi PK.

Rice (N Y). 2016 Dec;9(1):52. doi: 10.1186/s12284-016-0125-2. Epub 2016 Oct 1.


Quantitative trait loci identification and meta-analysis for rice panicle-related traits.

Wu Y, Huang M, Tao X, Guo T, Chen Z, Xiao W.

Mol Genet Genomics. 2016 Oct;291(5):1927-40. doi: 10.1007/s00438-016-1227-7. Epub 2016 Jul 5.


[QTLs mapping of leaf traits and root vitality in a recombinant inbred line population of rice].

Shen B, Zhuang JY, Zhang KQ, Xia QQ, Sheng CX, Zheng KL.

Yi Chuan Xue Bao. 2003 Dec;30(12):1133-9. Chinese.


Genome-Wide Analysis of japonica Rice Performance under Limited Water and Permanent Flooding Conditions.

Volante A, Desiderio F, Tondelli A, Perrini R, Orasen G, Biselli C, Riccardi P, Vattari A, Cavalluzzo D, Urso S, Ben Hassen M, Fricano A, Piffanelli P, Cozzi P, Biscarini F, Sacchi GA, Cattivelli L, Valè G.

Front Plant Sci. 2017 Oct 30;8:1862. doi: 10.3389/fpls.2017.01862. eCollection 2017.


Genetic variation and association mapping for 12 agronomic traits in indica rice.

Lu Q, Zhang M, Niu X, Wang S, Xu Q, Feng Y, Wang C, Deng H, Yuan X, Yu H, Wang Y, Wei X.

BMC Genomics. 2015 Dec 16;16:1067. doi: 10.1186/s12864-015-2245-2.


Identification of candidate genes for gelatinization temperature, gel consistency and pericarp color by GWAS in rice based on SLAF-sequencing.

Yang X, Xia X, Zeng Y, Nong B, Zhang Z, Wu Y, Xiong F, Zhang Y, Liang H, Deng G, Li D.

PLoS One. 2018 May 10;13(5):e0196690. doi: 10.1371/journal.pone.0196690. eCollection 2018.


Analysis of quantitative trait loci affecting chlorophyll content of rice leaves in a double haploid population and two backcross populations.

Jiang G, Zeng J, He Y.

Gene. 2014 Feb 25;536(2):287-95. doi: 10.1016/j.gene.2013.12.010. Epub 2013 Dec 17.


Genome-wide association mapping for root traits in a panel of rice accessions from Vietnam.

Phung NT, Mai CD, Hoang GT, Truong HT, Lavarenne J, Gonin M, Nguyen KL, Ha TT, Do VN, Gantet P, Courtois B.

BMC Plant Biol. 2016 Mar 10;16:64. doi: 10.1186/s12870-016-0747-y.

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