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Items: 1 to 20 of 101

1.

Bayesian model selection for the Drosophila gap gene network.

Zubair A, Rosen IG, Nuzhdin SV, Marjoram P.

BMC Bioinformatics. 2019 Jun 13;20(1):327. doi: 10.1186/s12859-019-2888-0.

2.

Whole-embryo modeling of early segmentation in Drosophila identifies robust and fragile expression domains.

Bieler J, Pozzorini C, Naef F.

Biophys J. 2011 Jul 20;101(2):287-96. doi: 10.1016/j.bpj.2011.05.060.

3.

Canalization of gene expression in the Drosophila blastoderm by gap gene cross regulation.

Manu, Surkova S, Spirov AV, Gursky VV, Janssens H, Kim AR, Radulescu O, Vanario-Alonso CE, Sharp DH, Samsonova M, Reinitz J.

PLoS Biol. 2009 Mar;7(3):e1000049. doi: 10.1371/journal.pbio.1000049. Epub 2009 Mar 10.

4.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug;10(4):040301. Epub 2013 Aug 2.

PMID:
23912807
5.

Mechanisms of gap gene expression canalization in the Drosophila blastoderm.

Gursky VV, Panok L, Myasnikova EM, Manu, Samsonova MG, Reinitz J, Samsonov AM.

BMC Syst Biol. 2011;5:118. doi: 10.1186/1752-0509-5-118. Epub 2011 Jul 28.

6.

The Drosophila gap gene network is composed of two parallel toggle switches.

Papatsenko D, Levine M.

PLoS One. 2011;6(7):e21145. doi: 10.1371/journal.pone.0021145. Epub 2011 Jul 1.

7.

Analysis of gap gene regulation in a 3D organism-scale model of the Drosophila melanogaster embryo.

Hengenius JB, Gribskov M, Rundell AE, Fowlkes CC, Umulis DM.

PLoS One. 2011;6(11):e26797. doi: 10.1371/journal.pone.0026797. Epub 2011 Nov 16.

8.

Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression.

Verd B, Crombach A, Jaeger J.

PLoS Comput Biol. 2017 Feb 3;13(2):e1005285. doi: 10.1371/journal.pcbi.1005285. eCollection 2017 Feb. Erratum in: PLoS Comput Biol. 2017 Dec 22;13(12 ):e1005918.

9.

Modeling of gap gene expression in Drosophila Kruppel mutants.

Kozlov K, Surkova S, Myasnikova E, Reinitz J, Samsonova M.

PLoS Comput Biol. 2012;8(8):e1002635. doi: 10.1371/journal.pcbi.1002635. Epub 2012 Aug 23.

10.

Gene circuit analysis of the terminal gap gene huckebein.

Ashyraliyev M, Siggens K, Janssens H, Blom J, Akam M, Jaeger J.

PLoS Comput Biol. 2009 Oct;5(10):e1000548. doi: 10.1371/journal.pcbi.1000548. Epub 2009 Oct 30.

11.

A caudal mRNA gradient controls posterior development in the wasp Nasonia.

Olesnicky EC, Brent AE, Tonnes L, Walker M, Pultz MA, Leaf D, Desplan C.

Development. 2006 Oct;133(20):3973-82. Epub 2006 Sep 13.

12.

Modeling segmental patterning in Drosophila: Maternal and gap genes.

Alves F, Dilão R.

J Theor Biol. 2006 Jul 21;241(2):342-59. Epub 2006 Jan 19.

PMID:
16427090
14.
15.

Analysis of functional importance of binding sites in the Drosophila gap gene network model.

Kozlov K, Gursky VV, Kulakovskiy IV, Dymova A, Samsonova M.

BMC Genomics. 2015;16 Suppl 13:S7. doi: 10.1186/1471-2164-16-S13-S7. Epub 2015 Dec 16.

16.

Spatial bistability generates hunchback expression sharpness in the Drosophila embryo.

Lopes FJ, Vieira FM, Holloway DM, Bisch PM, Spirov AV.

PLoS Comput Biol. 2008 Sep 26;4(9):e1000184. doi: 10.1371/journal.pcbi.1000184.

17.

Gene expression noise in spatial patterning: hunchback promoter structure affects noise amplitude and distribution in Drosophila segmentation.

Holloway DM, Lopes FJ, da Fontoura Costa L, Travençolo BA, Golyandina N, Usevich K, Spirov AV.

PLoS Comput Biol. 2011 Feb 3;7(2):e1001069. doi: 10.1371/journal.pcbi.1001069.

18.
19.

Mid-embryo patterning and precision in Drosophila segmentation: Krüppel dual regulation of hunchback.

Holloway DM, Spirov AV.

PLoS One. 2015 Mar 20;10(3):e0118450. doi: 10.1371/journal.pone.0118450. eCollection 2015.

20.

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