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Items: 1 to 20 of 100

1.

Engineered Functional Recovery of Microbial Rhodopsin without Retinal-Binding Lysine.

Yamauchi Y, Konno M, Yamada D, Yura K, Inoue K, Béjà O, Kandori H.

Photochem Photobiol. 2019 May 8. doi: 10.1111/php.13114. [Epub ahead of print]

PMID:
31066906
2.

Light-Driven Proton, Sodium Ion, and Chloride Ion Transfer Mechanisms in Rhodopsins: SAC-CI Study.

Miyahara T, Nakatsuji H.

J Phys Chem A. 2019 Mar 7;123(9):1766-1784. doi: 10.1021/acs.jpca.8b10203. Epub 2019 Feb 27.

PMID:
30762358
3.

A microbial rhodopsin with a unique retinal composition shows both sensory rhodopsin II and bacteriorhodopsin-like properties.

Sudo Y, Ihara K, Kobayashi S, Suzuki D, Irieda H, Kikukawa T, Kandori H, Homma M.

J Biol Chem. 2011 Feb 25;286(8):5967-76. doi: 10.1074/jbc.M110.190058. Epub 2010 Dec 6.

4.

Spectroscopic study of the transmembrane domain of a rhodopsin-phosphodiesterase fusion protein from a unicellular eukaryote.

Watari M, Ikuta T, Yamada D, Shihoya W, Yoshida K, Tsunoda SP, Nureki O, Kandori H.

J Biol Chem. 2019 Mar 8;294(10):3432-3443. doi: 10.1074/jbc.RA118.006277. Epub 2019 Jan 8.

PMID:
30622140
5.
6.

L105K mutant of proteorhodopsin.

Maiti TK, Yamada K, Inoue K, Kandori H.

Biochemistry. 2012 Apr 17;51(15):3198-204. doi: 10.1021/bi201916a. Epub 2012 Apr 9.

PMID:
22458882
7.

Movement of the retinylidene Schiff base counterion in rhodopsin by one helix turn reverses the pH dependence of the metarhodopsin I to metarhodopsin II transition.

Zvyaga TA, Min KC, Beck M, Sakmar TP.

J Biol Chem. 1993 Mar 5;268(7):4661-7. Erratum in: J Biol Chem 1994 Apr 29;269(17):13056.

8.

A distinct abundant group of microbial rhodopsins discovered using functional metagenomics.

Pushkarev A, Inoue K, Larom S, Flores-Uribe J, Singh M, Konno M, Tomida S, Ito S, Nakamura R, Tsunoda SP, Philosof A, Sharon I, Yutin N, Koonin EV, Kandori H, Béjà O.

Nature. 2018 Jun;558(7711):595-599. doi: 10.1038/s41586-018-0225-9. Epub 2018 Jun 20.

PMID:
29925949
9.

The evolutionary relationship between microbial rhodopsins and metazoan rhodopsins.

Shen L, Chen C, Zheng H, Jin L.

ScientificWorldJournal. 2013;2013:435651. doi: 10.1155/2013/435651. Epub 2013 Feb 11.

10.

Long-distance perturbation on Schiff base-counterion interactions by His30 and the extracellular Na+-binding site in Krokinobacter rhodopsin 2.

Shigeta A, Ito S, Kaneko R, Tomida S, Inoue K, Kandori H, Kawamura I.

Phys Chem Chem Phys. 2018 Mar 28;20(13):8450-8455. doi: 10.1039/c8cp00626a.

PMID:
29537054
11.

Cross-protomer interaction with the photoactive site in oligomeric proteorhodopsin complexes.

Ran T, Ozorowski G, Gao Y, Sineshchekov OA, Wang W, Spudich JL, Luecke H.

Acta Crystallogr D Biol Crystallogr. 2013 Oct;69(Pt 10):1965-80. doi: 10.1107/S0907444913017575. Epub 2013 Sep 20.

PMID:
24100316
12.

Retinal chromophore structure and Schiff base interactions in red-shifted channelrhodopsin-1 from Chlamydomonas augustae.

Ogren JI, Mamaev S, Russano D, Li H, Spudich JL, Rothschild KJ.

Biochemistry. 2014 Jun 24;53(24):3961-70. doi: 10.1021/bi500445c. Epub 2014 Jun 16.

13.

Chimeric microbial rhodopsins containing the third cytoplasmic loop of bovine rhodopsin.

Nakatsuma A, Yamashita T, Sasaki K, Kawanabe A, Inoue K, Furutani Y, Shichida Y, Kandori H.

Biophys J. 2011 Apr 20;100(8):1874-82. doi: 10.1016/j.bpj.2011.02.054.

14.

FTIR spectroscopy of a light-driven compatible sodium ion-proton pumping rhodopsin at 77 K.

Ono H, Inoue K, Abe-Yoshizumi R, Kandori H.

J Phys Chem B. 2014 May 8;118(18):4784-92. doi: 10.1021/jp500756f. Epub 2014 Apr 28.

PMID:
24773264
15.

An empirical test of convergent evolution in rhodopsins.

Mackin KA, Roy RA, Theobald DL.

Mol Biol Evol. 2014 Jan;31(1):85-95. doi: 10.1093/molbev/mst171. Epub 2013 Sep 27.

16.
17.

Chimeric proton-pumping rhodopsins containing the cytoplasmic loop of bovine rhodopsin.

Sasaki K, Yamashita T, Yoshida K, Inoue K, Shichida Y, Kandori H.

PLoS One. 2014 Mar 12;9(3):e91323. doi: 10.1371/journal.pone.0091323. eCollection 2014.

18.
19.

Ion-pumping microbial rhodopsins.

Kandori H.

Front Mol Biosci. 2015 Sep 22;2:52. doi: 10.3389/fmolb.2015.00052. eCollection 2015. Review.

20.

Mutation Study of Heliorhodopsin 48C12.

Singh M, Inoue K, Pushkarev A, Béjà O, Kandori H.

Biochemistry. 2018 Aug 21;57(33):5041-5049. doi: 10.1021/acs.biochem.8b00637. Epub 2018 Aug 6.

PMID:
30036039

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