Similar articles for PMID: 31028141

Year	Number of Results
1993	1
2009	1
2010	1
2012	1
2014	2
2015	6
2016	9
2017	13
2018	15
2019	27
2020	9
2021	9
2022	9
2023	1
2024	0

1

scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets.

Lin Y, Ghazanfar S, Wang KYX, Gagnon-Bartsch JA, Lo KK, Su X, Han ZG, Ormerod JT, Speed TP, Yang P, Yang JYH. Lin Y, et al. Proc Natl Acad Sci U S A. 2019 May 14;116(20):9775-9784. doi: 10.1073/pnas.1820006116. Epub 2019 Apr 26. Proc Natl Acad Sci U S A. 2019. PMID: 31028141 Free PMC article.

2

Evaluating stably expressed genes in single cells.

Lin Y, Ghazanfar S, Strbenac D, Wang A, Patrick E, Lin DM, Speed T, Yang JYH, Yang P. Lin Y, et al. Gigascience. 2019 Sep 1;8(9):giz106. doi: 10.1093/gigascience/giz106. Gigascience. 2019. PMID: 31531674 Free PMC article.

3

SCRABBLE: single-cell RNA-seq imputation constrained by bulk RNA-seq data.

Peng T, Zhu Q, Yin P, Tan K. Peng T, et al. Genome Biol. 2019 May 6;20(1):88. doi: 10.1186/s13059-019-1681-8. Genome Biol. 2019. PMID: 31060596 Free PMC article.

4

f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq.

Buettner F, Pratanwanich N, McCarthy DJ, Marioni JC, Stegle O. Buettner F, et al. Genome Biol. 2017 Nov 7;18(1):212. doi: 10.1186/s13059-017-1334-8. Genome Biol. 2017. PMID: 29115968 Free PMC article.

5

SCnorm: robust normalization of single-cell RNA-seq data.

Bacher R, Chu LF, Leng N, Gasch AP, Thomson JA, Stewart RM, Newton M, Kendziorski C. Bacher R, et al. Nat Methods. 2017 Jun;14(6):584-586. doi: 10.1038/nmeth.4263. Epub 2017 Apr 17. Nat Methods. 2017. PMID: 28418000 Free PMC article.

6

A multitask clustering approach for single-cell RNA-seq analysis in Recessive Dystrophic Epidermolysis Bullosa.

Zhang H, Lee CAA, Li Z, Garbe JR, Eide CR, Petegrosso R, Kuang R, Tolar J. Zhang H, et al. PLoS Comput Biol. 2018 Apr 9;14(4):e1006053. doi: 10.1371/journal.pcbi.1006053. eCollection 2018 Apr. PLoS Comput Biol. 2018. PMID: 29630593 Free PMC article.

7

TSEE: an elastic embedding method to visualize the dynamic gene expression patterns of time series single-cell RNA sequencing data.

An S, Ma L, Wan L. An S, et al. BMC Genomics. 2019 Apr 4;20(Suppl 2):224. doi: 10.1186/s12864-019-5477-8. BMC Genomics. 2019. PMID: 30967106 Free PMC article.

8

JingleBells: A Repository of Immune-Related Single-Cell RNA-Sequencing Datasets.

Ner-Gaon H, Melchior A, Golan N, Ben-Haim Y, Shay T. Ner-Gaon H, et al. J Immunol. 2017 May 1;198(9):3375-3379. doi: 10.4049/jimmunol.1700272. J Immunol. 2017. PMID: 28416714

9

Integration of RNA-Seq data with heterogeneous microarray data for breast cancer profiling.

Castillo D, Gálvez JM, Herrera LJ, Román BS, Rojas F, Rojas I. Castillo D, et al. BMC Bioinformatics. 2017 Nov 21;18(1):506. doi: 10.1186/s12859-017-1925-0. BMC Bioinformatics. 2017. PMID: 29157215 Free PMC article.

10

CaSTLe - Classification of single cells by transfer learning: Harnessing the power of publicly available single cell RNA sequencing experiments to annotate new experiments.

Lieberman Y, Rokach L, Shay T. Lieberman Y, et al. PLoS One. 2018 Oct 10;13(10):e0205499. doi: 10.1371/journal.pone.0205499. eCollection 2018. PLoS One. 2018. PMID: 30304022 Free PMC article.

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