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30791412,31335882,16331476,25551672,27380139,31975784,34195268,33029032,12736777,26566845,25895682,28947705,31521212,12595985,24361205,30081817,23638881,29802991,28821187,14513215,27535768,27696287,18772947,32842674,29342893,28388633,12845437,30465064,27077373,22089330,32792551,26922174,28422981,30626141,20012263,20227048,26400271,26293787,25445269,36070104,14986429,17846495,29757987,14682238,16217600,17464214,27198135,16432737,30171448,19166498,28278154,26243626,14513216,16477428,32042046,31204700,31249338,33300089,31399885,15122029,25805315,33328509,27363861,31948113,27010823,26566846,28282385,27996306,27251022,23226082,16775405,30931320,31952473,15765223,18622741,12898021,22312119,15105992,32664865,18844779,26334612,29856872,22196402,30222760,27441398,28070759,26942914,22968512,20064202,27311455,19508361,21423286,34282732,31991733,34148873,36966148,25336682,16189659,12168952,15949048,30951093,15284874,27513976,20022924,31936451,27507407,26673149,25314587,17995916,32797075,23236455,21984650,31862941,24231918,34353280,22291881,18274726,31948408,30824776,32972357,21479810,32013862,34828295,22198727,24371165,35684182,34187978,28887658,36306008,30963249,29359127,30699967,26086245,20526617,31797032,31301594,21829395,23442150,25785447,31910435,34535887,32643113,33917162,33079957,32673318,22080374,31313921,34593838,18274724,36232678,27882529,21726058,31570974,34069231,33609225,19949766,24599000,33098552,23071218,21600393,22382063,34202818,26640678,34264991,31918652,35531753,32525930,35838895,29098463,34473798,31171826,34807926,26206756,24506038,28952045,30185925,32019504,18726584,23203411,34014427,30092756,22760687,34769104,24885138,24767139,11999843,34147069,31208337,17989953,36507967,28861103,24995697,24166172,21602323,20035315,21161500,18393222,31844966,29398936,30819116,35408887,18469902,28744172,28580006,31505900,36079670,36840239,31521222,32357425,31283792,33647046,15859517,21360198,30847616,28871266,23604075,34021769,31257428,29085383,28885178,19933095,35216499,35606708,19224195,24491154,33847838,25360796,31130712,33167299,33243137,26366113,35401612,32089524,33942137,28352970,27659335,33217205,24984712,28523639,33193518,37050138,25205576,36714703,34568907,24072207,23400830,28623548,33388665,21121075,32761553,34064770,36011264,24154623,34211096,33713337,34712736,37058514,28690618,33415511,26719744,22083356,23935868,31336794,20619484,31072298,32824161,31802259,15976269,27457210,33409935,36212385,33035327,35356124,33711454,37093272,27234239,24840818,30443261,31204722,20880934,30696039,32714051,27848161,35205268,31432314,35584097,35747883,29593764,32547576,31437205,33235293,26152574,34924715,22361948,31661499,30339276,10984174,36589042,35563584,34828437,32488495,21965557,23874666,20972439,36536186,29981171,30854552,25162680,9383086,32377039,31207122,36233092,32439738,24743656,24920973,28163588,28283703,33708231,33482327,20690030,34377077,21789706,33123454,32384162,35298758,28744289,36176065,31409015,31182016,30894452,21229229,31069628,36140699,31253955,21482520,33917499,19417548,20623365,31718237,24376738,34515770,34912176,26847792,26061689,22888131,32472217,21178307,31004558,28303149,24757388,28775730,31544788,23136475,31481845,27350693,36792993,31028264,32903403,35557720,35262821,30369821,31309320,33767323,25821986,35260690,33583962,36908821,36674482,30013584,33854279,33438317,36840269,32582301,24166618,31059529,34875419,25193641,8533164,36597029,24728072,36172562,35567151,29907833,26987543,29044147,36552888,32939107,29671148,31086495,32256527,31332547,25320558,35734263,26483798,35312798,29151804,35866684,31358562,35397732,24166558,35361859,28536597,19132337,28429297,24821956,25977888,32055211,16219084,36147492,22817272,20506012,29599789,29085251,30565430,30877079,33889173,32161603,9872968,20947766,31086487,35923884,24586963,27807437,27419124,24177894,29398949,32997301,33668277,18575836,31647408,33268928,33790929,16418858,21062890,24166263,17657470,9472069,34669755,36771503,24166620,26175616,18719107,31378650,35983411,34199720,22207180,35280533,11756283,27555858,29312372,29845495,31481831,32824902,33510272,35845107,24169789,11865710,30135718,30622552,36616273,30037991,24240781,32423169,33480153,31309351,31792643,23940322,22267009,26391157,36501386,31569590,35922462,33273616,31086492,20092037,27065041,24509730,31598072,35251083,33922112,28424719,31988621,35283893,30569367,32391023,32753648,23115710,36389095,23853514,29123535,32708151,32277700,36186421,30294335,30918284,24169788,29085242,33016612,33093845,34529158,34686028,37047052,27795687,27178300,31915875,37035067,25189534,33569693,31481838,33569070,24442397,26566831,33924151,33569081,28018794,29479840,29942083,28469626,28611791,29988489,10601985,36255097,35340363,25844112,19238350,30804959,9539447,30872859,36061203,27620639,35035143,32519122,11999841,35406707,35574104,25844121,33677700,29967407,28556941,35874029,36909447,24510168,28979832,16010027,26339121,24173051,28853048,36822628,34597257,34451774,11298979,24173932,34512678,29163588,29163563,27234245,2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Identification of Quantitative Trait Loci Associated with Nutrient Use Efficiency Traits, Using SNP Markers in an Early Backcross Population of Rice (Oryza sativa L.).

Jewel ZA, Ali J, Mahender A, Hernandez J, Pang Y, Li Z. Jewel ZA, et al. Int J Mol Sci. 2019 Feb 19;20(4):900. doi: 10.3390/ijms20040900. Int J Mol Sci. 2019. PMID: 30791412 Free PMC article.

Genetic dissection of developmental responses of agro-morphological traits under different doses of nutrient fertilizers using high-density SNP markers.

Mahender A, Ali J, Prahalada GD, Sevilla MAL, Balachiranjeevi CH, Md J, Maqsood U, Li Z. Mahender A, et al. PLoS One. 2019 Jul 23;14(7):e0220066. doi: 10.1371/journal.pone.0220066. eCollection 2019. PLoS One. 2019. PMID: 31335882 Free PMC article.

Construction of introgression lines carrying wild rice (Oryza rufipogon Griff.) segments in cultivated rice (Oryza sativa L.) background and characterization of introgressed segments associated with yield-related traits.

Tian F, Li DJ, Fu Q, Zhu ZF, Fu YC, Wang XK, Sun CQ. Tian F, et al. Theor Appl Genet. 2006 Feb;112(3):570-80. doi: 10.1007/s00122-005-0165-2. Epub 2005 Dec 6. Theor Appl Genet. 2006. PMID: 16331476

Identification of quantitative trait loci for phosphorus use efficiency traits in rice using a high density SNP map.

Wang K, Cui K, Liu G, Xie W, Yu H, Pan J, Huang J, Nie L, Shah F, Peng S. Wang K, et al. BMC Genet. 2014 Dec 31;15:155. doi: 10.1186/s12863-014-0155-y. BMC Genet. 2014. PMID: 25551672 Free PMC article.

Quantitative trait loci identification and meta-analysis for rice panicle-related traits.

Wu Y, Huang M, Tao X, Guo T, Chen Z, Xiao W. Wu Y, et al. Mol Genet Genomics. 2016 Oct;291(5):1927-40. doi: 10.1007/s00438-016-1227-7. Epub 2016 Jul 5. Mol Genet Genomics. 2016. PMID: 27380139

Identification of main-effect quantitative trait loci (QTLs) for low-temperature stress tolerance germination- and early seedling vigor-related traits in rice (Oryza sativa L.).

Najeeb S, Ali J, Mahender A, Pang YL, Zilhas J, Murugaiyan V, Vemireddy LR, Li Z. Najeeb S, et al. Mol Breed. 2020;40(1):10. doi: 10.1007/s11032-019-1090-4. Epub 2020 Jan 4. Mol Breed. 2020. PMID: 31975784 Free PMC article.

Identification and Validation of QTLs for Macronutrient Contents in Brown and Milled Rice Using Two Backcross Populations between Oryza sativa and O. rufipogon.

Hu BL, Li X, Wu T, Huang DR, Huang FL, Yin JH, Wu YS. Hu BL, et al. Biomed Res Int. 2021 Jun 11;2021:5561734. doi: 10.1155/2021/5561734. eCollection 2021. Biomed Res Int. 2021. PMID: 34195268 Free PMC article.

Identification of quantitative trait loci governing early germination and seedling vigor traits related to weed competitive ability in rice.

Dimaano NGB, Ali J, Mahender A, Sta Cruz PC, Baltazar AM, Diaz MGQ, Pang YL, Acero BL Jr, Li Z. Dimaano NGB, et al. Euphytica. 2020;216(10):159. doi: 10.1007/s10681-020-02694-8. Epub 2020 Sep 19. Euphytica. 2020. PMID: 33029032 Free PMC article.

Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson.

Thomson MJ, Tai TH, McClung AM, Lai XH, Hinga ME, Lobos KB, Xu Y, Martinez CP, McCouch SR. Thomson MJ, et al. Theor Appl Genet. 2003 Aug;107(3):479-93. doi: 10.1007/s00122-003-1270-8. Epub 2003 May 8. Theor Appl Genet. 2003. PMID: 12736777

From QTL to variety-harnessing the benefits of QTLs for drought, flood and salt tolerance in mega rice varieties of India through a multi-institutional network.

Singh R, Singh Y, Xalaxo S, Verulkar S, Yadav N, Singh S, Singh N, Prasad KSN, Kondayya K, Rao PVR, Rani MG, Anuradha T, Suraynarayana Y, Sharma PC, Krishnamurthy SL, Sharma SK, Dwivedi JL, Singh AK, Singh PK, Nilanjay, Singh NK, Kumar R, Chetia SK, Ahmad T, Rai M, Perraju P, Pande A, Singh DN, Mandal NP, Reddy JN, Singh ON, Katara JL, Marandi B, Swain P, Sarkar RK, Singh DP, Mohapatra T, Padmawathi G, Ram T, Kathiresan RM, Paramsivam K, Nadarajan S, Thirumeni S, Nagarajan M, Singh AK, Vikram P, Kumar A, Septiningshih E, Singh US, Ismail AM, Mackill D, Singh NK. Singh R, et al. Plant Sci. 2016 Jan;242:278-287. doi: 10.1016/j.plantsci.2015.08.008. Epub 2015 Aug 20. Plant Sci. 2016. PMID: 26566845

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