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Items: 1 to 20 of 103

1.

APID database: redefining protein-protein interaction experimental evidences and binary interactomes.

Alonso-López D, Campos-Laborie FJ, Gutiérrez MA, Lambourne L, Calderwood MA, Vidal M, De Las Rivas J.

Database (Oxford). 2019 Jan 1;2019. doi: 10.1093/database/baz005.

2.

APID interactomes: providing proteome-based interactomes with controlled quality for multiple species and derived networks.

Alonso-López D, Gutiérrez MA, Lopes KP, Prieto C, Santamaría R, De Las Rivas J.

Nucleic Acids Res. 2016 Jul 8;44(W1):W529-35. doi: 10.1093/nar/gkw363. Epub 2016 Apr 30.

3.

APID: Agile Protein Interaction DataAnalyzer.

Prieto C, De Las Rivas J.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W298-302.

4.

HAPPI: an online database of comprehensive human annotated and predicted protein interactions.

Chen JY, Mamidipalli S, Huan T.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S16. doi: 10.1186/1471-2164-10-S1-S16.

5.
6.

PathPPI: an integrated dataset of human pathways and protein-protein interactions.

Tang H, Zhong F, Liu W, He F, Xie H.

Sci China Life Sci. 2015 Jun;58(6):579-89. doi: 10.1007/s11427-014-4766-3. Epub 2015 Jan 15.

PMID:
25591449
7.

PPI finder: a mining tool for human protein-protein interactions.

He M, Wang Y, Li W.

PLoS One. 2009;4(2):e4554. doi: 10.1371/journal.pone.0004554. Epub 2009 Feb 23.

8.

APID2NET: unified interactome graphic analyzer.

Hernandez-Toro J, Prieto C, De las Rivas J.

Bioinformatics. 2007 Sep 15;23(18):2495-7. Epub 2007 Jul 21.

9.

The IntAct molecular interaction database in 2010.

Aranda B, Achuthan P, Alam-Faruque Y, Armean I, Bridge A, Derow C, Feuermann M, Ghanbarian AT, Kerrien S, Khadake J, Kerssemakers J, Leroy C, Menden M, Michaut M, Montecchi-Palazzi L, Neuhauser SN, Orchard S, Perreau V, Roechert B, van Eijk K, Hermjakob H.

Nucleic Acids Res. 2010 Jan;38(Database issue):D525-31. doi: 10.1093/nar/gkp878. Epub 2009 Oct 22.

10.

PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from h-invitational protein-protein interactions integrative dataset.

Kikugawa S, Nishikata K, Murakami K, Sato Y, Suzuki M, Altaf-Ul-Amin M, Kanaya S, Imanishi T.

BMC Syst Biol. 2012;6 Suppl 2:S7. doi: 10.1186/1752-0509-6-S2-S7. Epub 2012 Dec 12.

11.

MPIDB: the microbial protein interaction database.

Goll J, Rajagopala SV, Shiau SC, Wu H, Lamb BT, Uetz P.

Bioinformatics. 2008 Aug 1;24(15):1743-4. doi: 10.1093/bioinformatics/btn285. Epub 2008 Jun 13.

12.

MEGADOCK-Web: an integrated database of high-throughput structure-based protein-protein interaction predictions.

Hayashi T, Matsuzaki Y, Yanagisawa K, Ohue M, Akiyama Y.

BMC Bioinformatics. 2018 May 8;19(Suppl 4):62. doi: 10.1186/s12859-018-2073-x.

13.

PICKLE 2.0: A human protein-protein interaction meta-database employing data integration via genetic information ontology.

Gioutlakis A, Klapa MI, Moschonas NK.

PLoS One. 2017 Oct 12;12(10):e0186039. doi: 10.1371/journal.pone.0186039. eCollection 2017.

14.

IIIDB: a database for isoform-isoform interactions and isoform network modules.

Tseng YT, Li W, Chen CH, Zhang S, Chen JJ, Zhou X, Liu CC.

BMC Genomics. 2015;16 Suppl 2:S10. doi: 10.1186/1471-2164-16-S2-S10. Epub 2015 Jan 21.

15.

HIPPIE v2.0: enhancing meaningfulness and reliability of protein-protein interaction networks.

Alanis-Lobato G, Andrade-Navarro MA, Schaefer MH.

Nucleic Acids Res. 2017 Jan 4;45(D1):D408-D414. doi: 10.1093/nar/gkw985. Epub 2016 Oct 24.

16.

Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service.

Kim JG, Park D, Kim BC, Cho SW, Kim YT, Park YJ, Cho HJ, Park H, Kim KB, Yoon KO, Park SJ, Lee BM, Bhak J.

BMC Bioinformatics. 2008 Jan 24;9:41. doi: 10.1186/1471-2105-9-41.

17.

PRIMOS: an integrated database of reassessed protein-protein interactions providing web-based access to in silico validation of experimentally derived data.

Rid R, Strasser W, Siegl D, Frech C, Kommenda M, Kern T, Hintner H, Bauer JW, Önder K.

Assay Drug Dev Technol. 2013 Jun;11(5):333-46. doi: 10.1089/adt.2013.506.

PMID:
23772554
18.

iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence.

Turner B, Razick S, Turinsky AL, Vlasblom J, Crowdy EK, Cho E, Morrison K, Donaldson IM, Wodak SJ.

Database (Oxford). 2010 Oct 12;2010:baq023. doi: 10.1093/database/baq023.

19.

ppiTrim: constructing non-redundant and up-to-date interactomes.

Stojmirović A, Yu YK.

Database (Oxford). 2011 Aug 27;2011:bar036. doi: 10.1093/database/bar036. Print 2011.

20.

Context-specific interactions in literature-curated protein interaction databases.

Stacey RG, Skinnider MA, Chik JHL, Foster LJ.

BMC Genomics. 2018 Oct 19;19(1):758. doi: 10.1186/s12864-018-5139-2.

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