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Items: 1 to 20 of 122

1.

Complex-centric proteome profiling by SEC-SWATH-MS.

Heusel M, Bludau I, Rosenberger G, Hafen R, Frank M, Banaei-Esfahani A, van Drogen A, Collins BC, Gstaiger M, Aebersold R.

Mol Syst Biol. 2019 Jan 14;15(1):e8438. doi: 10.15252/msb.20188438.

2.

Analysis of Human Nuclear Protein Complexes by Quantitative Mass Spectrometry Profiling.

Connelly KE, Hedrick V, Paschoal Sobreira TJ, Dykhuizen EC, Aryal UK.

Proteomics. 2018 Jun;18(11):e1700427. doi: 10.1002/pmic.201700427. Epub 2018 May 4.

3.

Integrated and Quantitative Proteomic Approach for Charting Temporal and Endogenous Protein Complexes.

Ke M, Liu J, Chen W, Chen L, Gao W, Qin Y, He A, Chu B, Tang J, Xu R, Deng Y, Tian R.

Anal Chem. 2018 Nov 6;90(21):12574-12583. doi: 10.1021/acs.analchem.8b02667. Epub 2018 Oct 17.

PMID:
30280895
4.

Analysis of Protein Complexes in the Unicellular Cyanobacterium Cyanothece ATCC 51142.

Aryal UK, Ding Z, Hedrick V, Sobreira TJP, Kihara D, Sherman LA.

J Proteome Res. 2018 Nov 2;17(11):3628-3643. doi: 10.1021/acs.jproteome.8b00170. Epub 2018 Oct 3.

5.

Analysis of 953 human proteins from a mitochondrial HEK293 fraction by complexome profiling.

Wessels HJ, Vogel RO, Lightowlers RN, Spelbrink JN, Rodenburg RJ, van den Heuvel LP, van Gool AJ, Gloerich J, Smeitink JA, Nijtmans LG.

PLoS One. 2013 Jul 23;8(7):e68340. doi: 10.1371/journal.pone.0068340. Print 2013.

6.

Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry.

Collins BC, Hunter CL, Liu Y, Schilling B, Rosenberger G, Bader SL, Chan DW, Gibson BW, Gingras AC, Held JM, Hirayama-Kurogi M, Hou G, Krisp C, Larsen B, Lin L, Liu S, Molloy MP, Moritz RL, Ohtsuki S, Schlapbach R, Selevsek N, Thomas SN, Tzeng SC, Zhang H, Aebersold R.

Nat Commun. 2017 Aug 21;8(1):291. doi: 10.1038/s41467-017-00249-5.

7.

Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling.

Aryal UK, McBride Z, Chen D, Xie J, Szymanski DB.

J Proteomics. 2017 Aug 23;166:8-18. doi: 10.1016/j.jprot.2017.06.004. Epub 2017 Jun 13.

PMID:
28627464
8.

Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system.

Collins BC, Gillet LC, Rosenberger G, Röst HL, Vichalkovski A, Gstaiger M, Aebersold R.

Nat Methods. 2013 Dec;10(12):1246-53. doi: 10.1038/nmeth.2703. Epub 2013 Oct 27.

PMID:
24162925
9.

Probing cellular complexity with proteomics.

Blackstock W, Rowley A.

Curr Opin Mol Ther. 1999 Dec;1(6):702-11. Review.

PMID:
19629867
10.

Characterization of native protein complexes and protein isoform variation using size-fractionation-based quantitative proteomics.

Kirkwood KJ, Ahmad Y, Larance M, Lamond AI.

Mol Cell Proteomics. 2013 Dec;12(12):3851-73. doi: 10.1074/mcp.M113.032367. Epub 2013 Sep 16.

11.

SWATH mass spectrometry as a tool for quantitative profiling of the matrisome.

Krasny L, Bland P, Kogata N, Wai P, Howard BA, Natrajan RC, Huang PH.

J Proteomics. 2018 Oct 30;189:11-22. doi: 10.1016/j.jprot.2018.02.026. Epub 2018 Mar 1.

12.

Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clustering.

Olinares PD, Ponnala L, van Wijk KJ.

Mol Cell Proteomics. 2010 Jul;9(7):1594-615. doi: 10.1074/mcp.M000038-MCP201. Epub 2010 Apr 26.

13.

Proteome organization in a genome-reduced bacterium.

Kühner S, van Noort V, Betts MJ, Leo-Macias A, Batisse C, Rode M, Yamada T, Maier T, Bader S, Beltran-Alvarez P, Castaño-Diez D, Chen WH, Devos D, Güell M, Norambuena T, Racke I, Rybin V, Schmidt A, Yus E, Aebersold R, Herrmann R, Böttcher B, Frangakis AS, Russell RB, Serrano L, Bork P, Gavin AC.

Science. 2009 Nov 27;326(5957):1235-40. doi: 10.1126/science.1176343.

14.

Native Proteomics in Discovery Mode Using Size-Exclusion Chromatography-Capillary Zone Electrophoresis-Tandem Mass Spectrometry.

Shen X, Kou Q, Guo R, Yang Z, Chen D, Liu X, Hong H, Sun L.

Anal Chem. 2018 Sep 4;90(17):10095-10099. doi: 10.1021/acs.analchem.8b02725. Epub 2018 Aug 13.

15.

Organellar protein complexes of Caco-2 human cells analyzed by two-dimensional blue native/SDS-PAGE and mass spectrometry.

Lasserre JP, Sylvius L, Joubert-Caron R, Caron M, Hardouin J.

J Proteome Res. 2010 Oct 1;9(10):5093-107. doi: 10.1021/pr100381m.

PMID:
20809636
16.

Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.

Brusniak MY, Bodenmiller B, Campbell D, Cooke K, Eddes J, Garbutt A, Lau H, Letarte S, Mueller LN, Sharma V, Vitek O, Zhang N, Aebersold R, Watts JD.

BMC Bioinformatics. 2008 Dec 16;9:542. doi: 10.1186/1471-2105-9-542.

17.

Quantitative proteomics by SWATH-MS reveals altered expression of nucleic acid binding and regulatory proteins in HIV-1-infected macrophages.

Haverland NA, Fox HS, Ciborowski P.

J Proteome Res. 2014 Apr 4;13(4):2109-19. doi: 10.1021/pr4012602. Epub 2014 Mar 10.

18.

LC-MS/MS as an alternative for SDS-PAGE in blue native analysis of protein complexes.

Wessels HJ, Vogel RO, van den Heuvel L, Smeitink JA, Rodenburg RJ, Nijtmans LG, Farhoud MH.

Proteomics. 2009 Sep;9(17):4221-8. doi: 10.1002/pmic.200900157.

PMID:
19688755
19.

High throughput and accurate serum proteome profiling by integrated sample preparation technology and single-run data independent mass spectrometry analysis.

Lin L, Zheng J, Yu Q, Chen W, Xing J, Chen C, Tian R.

J Proteomics. 2018 Mar 1;174:9-16. doi: 10.1016/j.jprot.2017.12.014. Epub 2017 Dec 24.

PMID:
29278786
20.

Identifying components of complexes.

Goffard N, Weiller G.

Methods Mol Biol. 2008;453:257-65. doi: 10.1007/978-1-60327-429-6_13.

PMID:
18712308

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