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Items: 1 to 20 of 92

1.

Improving the Gene Ontology Resource to Facilitate More Informative Analysis and Interpretation of Alzheimer's Disease Data.

Kramarz B, Roncaglia P, Meldal BHM, Huntley RP, Martin MJ, Orchard S, Parkinson H, Brough D, Bandopadhyay R, Hooper NM, Lovering RC.

Genes (Basel). 2018 Nov 29;9(12). pii: E593. doi: 10.3390/genes9120593.

2.

A drug target slim: using gene ontology and gene ontology annotations to navigate protein-ligand target space in ChEMBL.

Mutowo P, Bento AP, Dedman N, Gaulton A, Hersey A, Lomax J, Overington JP.

J Biomed Semantics. 2016 Sep 27;7(1):59.

3.

Cardiovascular GO annotation initiative year 1 report: why cardiovascular GO?

Lovering RC, Dimmer E, Khodiyar VK, Barrell DG, Scambler P, Hubank M, Apweiler R, Talmud PJ.

Proteomics. 2008 May;8(10):1950-3. doi: 10.1002/pmic.200800078.

PMID:
18491309
4.

The Gene Ontology of eukaryotic cilia and flagella.

Roncaglia P, van Dam TJP, Christie KR, Nacheva L, Toedt G, Huynen MA, Huntley RP, Gibson TJ, Lomax J.

Cilia. 2017 Nov 16;6:10. doi: 10.1186/s13630-017-0054-8. eCollection 2017.

5.

Using the Gene Ontology to Annotate Key Players in Parkinson's Disease.

Foulger RE, Denny P, Hardy J, Martin MJ, Sawford T, Lovering RC.

Neuroinformatics. 2016 Jul;14(3):297-304. doi: 10.1007/s12021-015-9293-2.

6.

Gene Ontology Consortium: going forward.

Gene Ontology Consortium.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1049-56. doi: 10.1093/nar/gku1179. Epub 2014 Nov 26.

7.

The Renal Gene Ontology Annotation Initiative.

Alam-Faruque Y, Dimmer EC, Huntley RP, O'Donovan C, Scambler P, Apweiler R.

Organogenesis. 2010 Apr-Jun;6(2):71-5. Review.

8.

Exploring autophagy with Gene Ontology.

Denny P, Feuermann M, Hill DP, Lovering RC, Plun-Favreau H, Roncaglia P.

Autophagy. 2018;14(3):419-436. doi: 10.1080/15548627.2017.1415189. Epub 2018 Feb 17. Review.

9.

Best Practices in Manual Annotation with the Gene Ontology.

Poux S, Gaudet P.

Methods Mol Biol. 2017;1446:41-54.

PMID:
27812934
10.

Representing kidney development using the gene ontology.

Alam-Faruque Y, Hill DP, Dimmer EC, Harris MA, Foulger RE, Tweedie S, Attrill H, Howe DG, Thomas SR, Davidson D, Woolf AS, Blake JA, Mungall CJ, O'Donovan C, Apweiler R, Huntley RP.

PLoS One. 2014 Jun 18;9(6):e99864. doi: 10.1371/journal.pone.0099864. eCollection 2014.

11.

How Does the Scientific Community Contribute to Gene Ontology?

Lovering RC.

Methods Mol Biol. 2017;1446:85-93. Review.

PMID:
27812937
12.

A guide to best practices for Gene Ontology (GO) manual annotation.

Balakrishnan R, Harris MA, Huntley R, Van Auken K, Cherry JM.

Database (Oxford). 2013 Jul 9;2013:bat054. doi: 10.1093/database/bat054. Print 2013.

13.

Guidelines for the functional annotation of microRNAs using the Gene Ontology.

Huntley RP, Sitnikov D, Orlic-Milacic M, Balakrishnan R, D'Eustachio P, Gillespie ME, Howe D, Kalea AZ, Maegdefessel L, Osumi-Sutherland D, Petri V, Smith JR, Van Auken K, Wood V, Zampetaki A, Mayr M, Lovering RC.

RNA. 2016 May;22(5):667-76. doi: 10.1261/rna.055301.115. Epub 2016 Feb 25.

14.

Understanding how and why the Gene Ontology and its annotations evolve: the GO within UniProt.

Huntley RP, Sawford T, Martin MJ, O'Donovan C.

Gigascience. 2014 Mar 18;3(1):4. doi: 10.1186/2047-217X-3-4.

15.

The Gene Ontology: enhancements for 2011.

Gene Ontology Consortium.

Nucleic Acids Res. 2012 Jan;40(Database issue):D559-64. doi: 10.1093/nar/gkr1028. Epub 2011 Nov 18.

16.

The use of semantic similarity measures for optimally integrating heterogeneous Gene Ontology data from large scale annotation pipelines.

Mazandu GK, Mulder NJ.

Front Genet. 2014 Aug 6;5:264. doi: 10.3389/fgene.2014.00264. eCollection 2014.

17.

Extracting Cross-Ontology Weighted Association Rules from Gene Ontology Annotations.

Agapito G, Milano M, Guzzi PH, Cannataro M.

IEEE/ACM Trans Comput Biol Bioinform. 2016 Mar-Apr;13(2):197-208. doi: 10.1109/TCBB.2015.2462348.

PMID:
27045823
18.

The GOA database in 2009--an integrated Gene Ontology Annotation resource.

Barrell D, Dimmer E, Huntley RP, Binns D, O'Donovan C, Apweiler R.

Nucleic Acids Res. 2009 Jan;37(Database issue):D396-403. doi: 10.1093/nar/gkn803. Epub 2008 Oct 27.

19.

Creating the gene ontology resource: design and implementation.

Gene Ontology Consortium.

Genome Res. 2001 Aug;11(8):1425-33.

20.

Extending gene ontology in the context of extracellular RNA and vesicle communication.

Cheung KH, Keerthikumar S, Roncaglia P, Subramanian SL, Roth ME, Samuel M, Anand S, Gangoda L, Gould S, Alexander R, Galas D, Gerstein MB, Hill AF, Kitchen RR, Lötvall J, Patel T, Procaccini DC, Quesenberry P, Rozowsky J, Raffai RL, Shypitsyna A, Su AI, Théry C, Vickers K, Wauben MH, Mathivanan S, Milosavljevic A, Laurent LC.

J Biomed Semantics. 2016 Apr 12;7:19. doi: 10.1186/s13326-016-0061-5. eCollection 2016.

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