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Items: 1 to 20 of 100

1.

Tracing Antibody Repertoire Evolution by Systems Phylogeny.

Yermanos AD, Dounas AK, Stadler T, Oxenius A, Reddy ST.

Front Immunol. 2018 Oct 2;9:2149. doi: 10.3389/fimmu.2018.02149. eCollection 2018. Review.

2.

Systems Analysis Reveals High Genetic and Antigen-Driven Predetermination of Antibody Repertoires throughout B Cell Development.

Greiff V, Menzel U, Miho E, Weber C, Riedel R, Cook S, Valai A, Lopes T, Radbruch A, Winkler TH, Reddy ST.

Cell Rep. 2017 May 16;19(7):1467-1478. doi: 10.1016/j.celrep.2017.04.054.

3.

Comparison of methods for phylogenetic B-cell lineage inference using time-resolved antibody repertoire simulations (AbSim).

Yermanos A, Greiff V, Krautler NJ, Menzel U, Dounas A, Miho E, Oxenius A, Stadler T, Reddy ST.

Bioinformatics. 2017 Dec 15;33(24):3938-3946. doi: 10.1093/bioinformatics/btx533.

PMID:
28968873
4.

ASAP - A Webserver for Immunoglobulin-Sequencing Analysis Pipeline.

Avram O, Vaisman-Mentesh A, Yehezkel D, Ashkenazy H, Pupko T, Wine Y.

Front Immunol. 2018 Jul 30;9:1686. doi: 10.3389/fimmu.2018.01686. eCollection 2018.

5.

Reconstructing and mining the B cell repertoire with ImmunediveRsity.

Cortina-Ceballos B, Godoy-Lozano EE, Sámano-Sánchez H, Aguilar-Salgado A, Velasco-Herrera Mdel C, Vargas-Chávez C, Velázquez-Ramírez D, Romero G, Moreno J, Téllez-Sosa J, Martínez-Barnetche J.

MAbs. 2015;7(3):516-24. doi: 10.1080/19420862.2015.1026502.

6.

The promise and challenge of high-throughput sequencing of the antibody repertoire.

Georgiou G, Ippolito GC, Beausang J, Busse CE, Wardemann H, Quake SR.

Nat Biotechnol. 2014 Feb;32(2):158-68. doi: 10.1038/nbt.2782. Epub 2014 Jan 19. Review.

7.

VDJviz: a versatile browser for immunogenomics data.

Bagaev DV, Zvyagin IV, Putintseva EV, Izraelson M, Britanova OV, Chudakov DM, Shugay M.

BMC Genomics. 2016 Jun 13;17:453. doi: 10.1186/s12864-016-2799-7.

8.

Frequency and genetic characterization of V(DD)J recombinants in the human peripheral blood antibody repertoire.

Briney BS, Willis JR, Hicar MD, Thomas JW 2nd, Crowe JE Jr.

Immunology. 2012 Sep;137(1):56-64. doi: 10.1111/j.1365-2567.2012.03605.x.

9.

Highly sensitive and unbiased approach for elucidating antibody repertoires.

Lin SG, Ba Z, Du Z, Zhang Y, Hu J, Alt FW.

Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7846-51. doi: 10.1073/pnas.1608649113. Epub 2016 Jun 27.

10.

Accurate and predictive antibody repertoire profiling by molecular amplification fingerprinting.

Khan TA, Friedensohn S, Gorter de Vries AR, Straszewski J, Ruscheweyh HJ, Reddy ST.

Sci Adv. 2016 Mar 11;2(3):e1501371. doi: 10.1126/sciadv.1501371. eCollection 2016 Mar.

11.

BRILIA: Integrated Tool for High-Throughput Annotation and Lineage Tree Assembly of B-Cell Repertoires.

Lee DW, Khavrutskii IV, Wallqvist A, Bavari S, Cooper CL, Chaudhury S.

Front Immunol. 2017 Jan 17;7:681. doi: 10.3389/fimmu.2016.00681. eCollection 2016.

12.
13.

The past, present, and future of immune repertoire biology - the rise of next-generation repertoire analysis.

Six A, Mariotti-Ferrandiz ME, Chaara W, Magadan S, Pham HP, Lefranc MP, Mora T, Thomas-Vaslin V, Walczak AM, Boudinot P.

Front Immunol. 2013 Nov 27;4:413. doi: 10.3389/fimmu.2013.00413. Review.

14.

Next-generation sequencing and protein mass spectrometry for the comprehensive analysis of human cellular and serum antibody repertoires.

Lavinder JJ, Horton AP, Georgiou G, Ippolito GC.

Curr Opin Chem Biol. 2015 Feb;24:112-20. doi: 10.1016/j.cbpa.2014.11.007. Epub 2014 Nov 25. Review.

PMID:
25461729
15.

Rhesus Macaque B-Cell Responses to an HIV-1 Trimer Vaccine Revealed by Unbiased Longitudinal Repertoire Analysis.

Dai K, He L, Khan SN, O'Dell S, McKee K, Tran K, Li Y, Sundling C, Morris CD, Mascola JR, Karlsson Hedestam GB, Wyatt RT, Zhu J.

MBio. 2015 Nov 3;6(6):e01375-15. doi: 10.1128/mBio.01375-15.

16.

Lineage structure of the human antibody repertoire in response to influenza vaccination.

Jiang N, He J, Weinstein JA, Penland L, Sasaki S, He XS, Dekker CL, Zheng NY, Huang M, Sullivan M, Wilson PC, Greenberg HB, Davis MM, Fisher DS, Quake SR.

Sci Transl Med. 2013 Feb 6;5(171):171ra19. doi: 10.1126/scitranslmed.3004794. Erratum in: Sci Transl Med. 2013 Jul 10;5(193):193er8.

17.

Synthetic Standards Combined With Error and Bias Correction Improve the Accuracy and Quantitative Resolution of Antibody Repertoire Sequencing in Human Naïve and Memory B Cells.

Friedensohn S, Lindner JM, Cornacchione V, Iazeolla M, Miho E, Zingg A, Meng S, Traggiai E, Reddy ST.

Front Immunol. 2018 Jun 20;9:1401. doi: 10.3389/fimmu.2018.01401. eCollection 2018.

18.

VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements.

Christley S, Scarborough W, Salinas E, Rounds WH, Toby IT, Fonner JM, Levin MK, Kim M, Mock SA, Jordan C, Ostmeyer J, Buntzman A, Rubelt F, Davila ML, Monson NL, Scheuermann RH, Cowell LG.

Front Immunol. 2018 May 8;9:976. doi: 10.3389/fimmu.2018.00976. eCollection 2018.

19.

Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles.

Gadala-Maria D, Yaari G, Uduman M, Kleinstein SH.

Proc Natl Acad Sci U S A. 2015 Feb 24;112(8):E862-70. doi: 10.1073/pnas.1417683112. Epub 2015 Feb 9.

20.

Profiling of the TCRβ repertoire in non-model species using high-throughput sequencing.

Migalska M, Sebastian A, Radwan J.

Sci Rep. 2018 Aug 2;8(1):11613. doi: 10.1038/s41598-018-30037-0.

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