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A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.).

Rinke C, Rubino F, Messer LF, Youssef N, Parks DH, Chuvochina M, Brown M, Jeffries T, Tyson GW, Seymour JR, Hugenholtz P.

ISME J. 2019 Mar;13(3):663-675. doi: 10.1038/s41396-018-0282-y. Epub 2018 Oct 15. Erratum in: ISME J. 2019 Nov 21;:.


Localized high abundance of Marine Group II archaea in the subtropical Pearl River Estuary: implications for their niche adaptation.

Xie W, Luo H, Murugapiran SK, Dodsworth JA, Chen S, Sun Y, Hedlund BP, Wang P, Fang H, Deng M, Zhang CL.

Environ Microbiol. 2018 Feb;20(2):734-754. doi: 10.1111/1462-2920.14004. Epub 2017 Dec 29.


Pangenome evidence for extensive interdomain horizontal transfer affecting lineage core and shell genes in uncultured planktonic thaumarchaeota and euryarchaeota.

Deschamps P, Zivanovic Y, Moreira D, Rodriguez-Valera F, López-García P.

Genome Biol Evol. 2014 Jun 12;6(7):1549-63. doi: 10.1093/gbe/evu127.


Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea.

Brochier-Armanet C, Deschamps P, López-García P, Zivanovic Y, Rodríguez-Valera F, Moreira D.

ISME J. 2011 Aug;5(8):1291-302. doi: 10.1038/ismej.2011.16. Epub 2011 Feb 24.


Genomic ecology of Marine Group II, the most common marine planktonic Archaea across the surface ocean.

Pereira O, Hochart C, Auguet JC, Debroas D, Galand PE.

Microbiologyopen. 2019 Sep;8(9):e00852. doi: 10.1002/mbo3.852. Epub 2019 Jul 2.


Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel.

Massana R, Murray AE, Preston CM, DeLong EF.

Appl Environ Microbiol. 1997 Jan;63(1):50-6.


Ammonia-oxidising archaea living at low pH: Insights from comparative genomics.

Herbold CW, Lehtovirta-Morley LE, Jung MY, Jehmlich N, Hausmann B, Han P, Loy A, Pester M, Sayavedra-Soto LA, Rhee SK, Prosser JI, Nicol GW, Wagner M, Gubry-Rangin C.

Environ Microbiol. 2017 Dec;19(12):4939-4952. doi: 10.1111/1462-2920.13971. Epub 2017 Dec 4.


Stratification of archaeal membrane lipids in the ocean and implications for adaptation and chemotaxonomy of planktonic archaea.

Zhu C, Wakeham SG, Elling FJ, Basse A, Mollenhauer G, Versteegh GJ, Könneke M, Hinrichs KU.

Environ Microbiol. 2016 Dec;18(12):4324-4336. doi: 10.1111/1462-2920.13289. Epub 2016 Apr 28.


Metagenomic analysis of a complex marine planktonic thaumarchaeal community from the Gulf of Maine.

Tully BJ, Nelson WC, Heidelberg JF.

Environ Microbiol. 2012 Jan;14(1):254-67. doi: 10.1111/j.1462-2920.2011.02628.x. Epub 2011 Nov 3.


Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea.

Frigaard NU, Martinez A, Mincer TJ, DeLong EF.

Nature. 2006 Feb 16;439(7078):847-50.


Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions.

Martin-Cuadrado AB, Rodriguez-Valera F, Moreira D, Alba JC, Ivars-Martínez E, Henn MR, Talla E, López-García P.

ISME J. 2008 Aug;2(8):865-86. doi: 10.1038/ismej.2008.40. Epub 2008 May 8.


Single cells within the Puerto Rico trench suggest hadal adaptation of microbial lineages.

León-Zayas R, Novotny M, Podell S, Shepard CM, Berkenpas E, Nikolenko S, Pevzner P, Lasken RS, Bartlett DH.

Appl Environ Microbiol. 2015 Dec;81(24):8265-76. doi: 10.1128/AEM.01659-15. Epub 2015 Sep 18.


Correction: A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.).

Rinke C, Rubino F, Messer LF, Youssef N, Parks DH, Chuvochina M, Brown M, Jeffries T, Tyson GW, Seymour JR, Hugenholtz P.

ISME J. 2019 Nov 21. doi: 10.1038/s41396-019-0556-z. [Epub ahead of print]


Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.

Dupont CL, Rusch DB, Yooseph S, Lombardo MJ, Richter RA, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH, Halpern AL, Lasken RS, Nealson K, Friedman R, Venter JC.

ISME J. 2012 Jun;6(6):1186-99. doi: 10.1038/ismej.2011.189. Epub 2011 Dec 15.


Horizontal gene transfer and genome evolution in Methanosarcina.

Garushyants SK, Kazanov MD, Gelfand MS.

BMC Evol Biol. 2015 Jun 5;15:102. doi: 10.1186/s12862-015-0393-2.


Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria.

Ugalde JA, Podell S, Narasingarao P, Allen EE.

Biol Direct. 2011 Oct 10;6:52. doi: 10.1186/1745-6150-6-52.


Metagenome-assembled genomes uncover a global brackish microbiome.

Hugerth LW, Larsson J, Alneberg J, Lindh MV, Legrand C, Pinhassi J, Andersson AF.

Genome Biol. 2015 Dec 14;16:279. doi: 10.1186/s13059-015-0834-7.


Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.

Pinhassi J, DeLong EF, Béjà O, González JM, Pedrós-Alió C.

Microbiol Mol Biol Rev. 2016 Sep 14;80(4):929-54. doi: 10.1128/MMBR.00003-16. Print 2016 Dec. Review.


A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces.

Massana R, DeLong EF, Pedrós-Alió C.

Appl Environ Microbiol. 2000 May;66(5):1777-87.

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