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Items: 1 to 20 of 110

1.

Partial enzymatic reactions: A missed opportunity in proteomics research.

Deng J, Julian MH, Lazar IM.

Rapid Commun Mass Spectrom. 2018 Dec 15;32(23):2065-2073. doi: 10.1002/rcm.8283.

2.

High-throughput database search and large-scale negative polarity liquid chromatography-tandem mass spectrometry with ultraviolet photodissociation for complex proteomic samples.

Madsen JA, Xu H, Robinson MR, Horton AP, Shaw JB, Giles DK, Kaoud TS, Dalby KN, Trent MS, Brodbelt JS.

Mol Cell Proteomics. 2013 Sep;12(9):2604-14. doi: 10.1074/mcp.O113.028258. Epub 2013 May 21.

3.

Why less is more when generating tryptic peptides in bottom-up proteomics.

Hildonen S, Halvorsen TG, Reubsaet L.

Proteomics. 2014 Sep;14(17-18):2031-41. doi: 10.1002/pmic.201300479. Epub 2014 Aug 13.

PMID:
25044798
4.

Combination of Edman degradation of peptides with liquid chromatography/mass spectrometry workflow for peptide identification in bottom-up proteomics.

Lobas AA, Verenchikov AN, Goloborodko AA, Levitsky LI, Gorshkov MV.

Rapid Commun Mass Spectrom. 2013 Feb 15;27(3):391-400. doi: 10.1002/rcm.6462.

PMID:
23280970
5.

Protein- versus peptide fractionation in the first dimension of two-dimensional high-performance liquid chromatography-matrix-assisted laser desorption/ionization tandem mass spectrometry for qualitative proteome analysis of tissue samples.

Melchior K, Tholey A, Heisel S, Keller A, Lenhof HP, Meese E, Huber CG.

J Chromatogr A. 2010 Oct 1;1217(40):6159-68. doi: 10.1016/j.chroma.2010.07.044. Epub 2010 Jul 21.

PMID:
20810122
6.

Making broad proteome protein measurements in 1-5 min using high-speed RPLC separations and high-accuracy mass measurements.

Shen Y, Strittmatter EF, Zhang R, Metz TO, Moore RJ, Li F, Udseth HR, Smith RD, Unger KK, Kumar D, Lubda D.

Anal Chem. 2005 Dec 1;77(23):7763-73.

PMID:
16316187
7.

The proteomic analysis improved by cleavage kinetics-based fractionation of tryptic peptides.

Pan Y, Mao J, Deng Z, Dong M, Bian Y, Ye M, Zou H.

Proteomics. 2015 Nov;15(21):3613-6. doi: 10.1002/pmic.201400498.

PMID:
26256691
8.

Multiple solvent elution, a method to counter the effects of coelution and ion suppression in LC-MS analysis in bottom up proteomics.

Budamgunta H, Maes E, Willems H, Menschaert G, Schildermans K, Kumar AA, Boonen K, Baggerman G.

J Chromatogr B Analyt Technol Biomed Life Sci. 2019 Aug 15;1124:256-264. doi: 10.1016/j.jchromb.2019.06.017. Epub 2019 Jun 15.

PMID:
31238262
9.

Optimization of data-dependent acquisition parameters for coupling high-speed separations with LC-MS/MS for protein identifications.

Johnson D, Boyes B, Fields T, Kopkin R, Orlando R.

J Biomol Tech. 2013 Jul;24(2):62-72. doi: 10.7171/jbt.13-2402-003.

10.

Shotgun proteome analysis utilising mixed mode (reversed phase-anion exchange chromatography) in conjunction with reversed phase liquid chromatography mass spectrometry analysis.

Phillips HL, Williamson JC, van Elburg KA, Snijders AP, Wright PC, Dickman MJ.

Proteomics. 2010 Aug;10(16):2950-60. doi: 10.1002/pmic.200900669.

PMID:
20662100
11.

The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results.

Braisted JC, Kuntumalla S, Vogel C, Marcotte EM, Rodrigues AR, Wang R, Huang ST, Ferlanti ES, Saeed AI, Fleischmann RD, Peterson SN, Pieper R.

BMC Bioinformatics. 2008 Dec 9;9:529. doi: 10.1186/1471-2105-9-529.

12.

Plasma proteome coverage is increased by unique peptide recovery from sodium deoxycholate precipitate.

Serra A, Zhu H, Gallart-Palau X, Park JE, Ho HH, Tam JP, Sze SK.

Anal Bioanal Chem. 2016 Mar;408(7):1963-73. doi: 10.1007/s00216-016-9312-7. Epub 2016 Jan 25.

PMID:
26804737
13.

Comparison of alternative analytical techniques for the characterisation of the human serum proteome in HUPO Plasma Proteome Project.

Li X, Gong Y, Wang Y, Wu S, Cai Y, He P, Lu Z, Ying W, Zhang Y, Jiao L, He H, Zhang Z, He F, Zhao X, Qian X.

Proteomics. 2005 Aug;5(13):3423-41.

PMID:
16052619
14.

Sample preparation strategies for targeted proteomics via proteotypic peptides in human blood using liquid chromatography tandem mass spectrometry.

Dittrich J, Becker S, Hecht M, Ceglarek U.

Proteomics Clin Appl. 2015 Feb;9(1-2):5-16. doi: 10.1002/prca.201400121. Epub 2014 Dec 28. Review.

PMID:
25418444
15.

Uncovering immobilized trypsin digestion features from large-scale proteome data generated by high-resolution mass spectrometry.

Sun L, Zhu G, Yan X, Mou S, Dovichi NJ.

J Chromatogr A. 2014 Apr 11;1337:40-7. doi: 10.1016/j.chroma.2014.02.014. Epub 2014 Feb 22.

16.

Analysis of RP-HPLC loading conditions for maximizing peptide identifications in shotgun proteomics.

Peterson A, Hohmann L, Huang L, Kim B, Eng JK, Martin DB.

J Proteome Res. 2009 Aug;8(8):4161-8. doi: 10.1021/pr9001417.

17.

Protein identification by accurate mass matrix-assisted laser desorption/ionization imaging of tryptic peptides.

Schober Y, Schramm T, Spengler B, Römpp A.

Rapid Commun Mass Spectrom. 2011 Sep 15;25(17):2475-83. doi: 10.1002/rcm.5135.

PMID:
21818808
18.

Understanding the role of proteolytic digestion on discovery and targeted proteomic measurements using liquid chromatography tandem mass spectrometry and design of experiments.

Loziuk PL, Wang J, Li Q, Sederoff RR, Chiang VL, Muddiman DC.

J Proteome Res. 2013 Dec 6;12(12):5820-9. doi: 10.1021/pr4008442. Epub 2013 Nov 1.

PMID:
24144163
19.

Achieving efficient digestion faster with Flash Digest: potential alternative to multi-step detergent assisted in-solution digestion in quantitative proteomics experiments.

Shah V, Lassman ME, Chen Y, Zhou H, Laterza OF.

Rapid Commun Mass Spectrom. 2017 Jan 30;31(2):193-199. doi: 10.1002/rcm.7778.

PMID:
27794205
20.

Shotgun analysis of membrane proteomes by an improved SDS-assisted sample preparation method coupled with liquid chromatography-tandem mass spectrometry.

Lin Y, Jiang H, Yan Y, Peng B, Chen J, Lin H, Liu Z.

J Chromatogr B Analyt Technol Biomed Life Sci. 2012 Dec 12;911:6-14. doi: 10.1016/j.jchromb.2012.10.016. Epub 2012 Oct 23.

PMID:
23217299

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