Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 101

1.

Robustness of a Reconstituted Escherichia coli Protein Translation System Analyzed by Computational Modeling.

Matsuura T, Hosoda K, Shimizu Y.

ACS Synth Biol. 2018 Aug 17;7(8):1964-1972. doi: 10.1021/acssynbio.8b00228. Epub 2018 Jul 26.

PMID:
30004679
2.

Reaction dynamics analysis of a reconstituted Escherichia coli protein translation system by computational modeling.

Matsuura T, Tanimura N, Hosoda K, Yomo T, Shimizu Y.

Proc Natl Acad Sci U S A. 2017 Feb 21;114(8):E1336-E1344. doi: 10.1073/pnas.1615351114. Epub 2017 Feb 6.

3.

An algorithmic framework for genome-wide modeling and analysis of translation networks.

Mehra A, Hatzimanikatis V.

Biophys J. 2006 Feb 15;90(4):1136-46. Epub 2005 Nov 18.

4.

A kinetic model of Escherichia coli core metabolism satisfying multiple sets of mutant flux data.

Khodayari A, Zomorrodi AR, Liao JC, Maranas CD.

Metab Eng. 2014 Sep;25:50-62. doi: 10.1016/j.ymben.2014.05.014. Epub 2014 Jun 10.

PMID:
24928774
5.

Parametric sensitivity analysis for biochemical reaction networks based on pathwise information theory.

Pantazis Y, Katsoulakis MA, Vlachos DG.

BMC Bioinformatics. 2013 Oct 22;14:311. doi: 10.1186/1471-2105-14-311.

6.

Mathematical identification of critical reactions in the interlocked feedback model.

Kurata H, Tanaka T, Ohnishi F.

PLoS One. 2007 Oct 31;2(10):e1103.

7.

Thermal robustness of signaling in bacterial chemotaxis.

Oleksiuk O, Jakovljevic V, Vladimirov N, Carvalho R, Paster E, Ryu WS, Meir Y, Wingreen NS, Kollmann M, Sourjik V.

Cell. 2011 Apr 15;145(2):312-21. doi: 10.1016/j.cell.2011.03.013.

8.

Novel recurrent neural network for modelling biological networks: oscillatory p53 interaction dynamics.

Ling H, Samarasinghe S, Kulasiri D.

Biosystems. 2013 Dec;114(3):191-205. doi: 10.1016/j.biosystems.2013.08.004. Epub 2013 Sep 5.

PMID:
24012741
9.

Using chemistry and microfluidics to understand the spatial dynamics of complex biological networks.

Kastrup CJ, Runyon MK, Lucchetta EM, Price JM, Ismagilov RF.

Acc Chem Res. 2008 Apr;41(4):549-58. doi: 10.1021/ar700174g. Epub 2008 Jan 25.

10.

Quasi-multiparameter sensitivity measure for robustness analysis of complex biochemical networks.

Maeda K, Kurata H.

J Theor Biol. 2011 Mar 7;272(1):174-86. doi: 10.1016/j.jtbi.2010.12.012. Epub 2010 Dec 14.

PMID:
21163268
11.

Dynamics robustness of cascading systems.

Young JT, Hatakeyama TS, Kaneko K.

PLoS Comput Biol. 2017 Mar 13;13(3):e1005434. doi: 10.1371/journal.pcbi.1005434. eCollection 2017 Mar.

12.

Comprehensive analysis of the effects of Escherichia coli ORFs on protein translation reaction.

Kazuta Y, Adachi J, Matsuura T, Ono N, Mori H, Yomo T.

Mol Cell Proteomics. 2008 Aug;7(8):1530-40. doi: 10.1074/mcp.M800051-MCP200. Epub 2008 May 2.

13.

A new measure of the robustness of biochemical networks.

Chen BS, Wang YC, Wu WS, Li WH.

Bioinformatics. 2005 Jun 1;21(11):2698-705. Epub 2005 Feb 24.

PMID:
15731208
14.

Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints.

Chakrabarti A, Miskovic L, Soh KC, Hatzimanikatis V.

Biotechnol J. 2013 Sep;8(9):1043-57. doi: 10.1002/biot.201300091. Epub 2013 Aug 20.

PMID:
23868566
15.
16.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug;10(4):040301. Epub 2013 Aug 2.

PMID:
23912807
17.

S-system-based analysis of the robust properties common to many biochemical network models.

Matsuoka Y, Jahan N, Kurata H.

Bioprocess Biosyst Eng. 2016 May;39(5):735-46. doi: 10.1007/s00449-016-1554-4. Epub 2016 Feb 9.

PMID:
26861555
18.

Propagation of kinetic uncertainties through a canonical topology of the TLR4 signaling network in different regions of biochemical reaction space.

GutiƩrrez J, St Laurent G 3rd, Urcuqui-Inchima S.

Theor Biol Med Model. 2010 Mar 15;7:7. doi: 10.1186/1742-4682-7-7.

19.

A network characteristic that correlates environmental and genetic robustness.

Shreif Z, Periwal V.

PLoS Comput Biol. 2014 Feb 13;10(2):e1003474. doi: 10.1371/journal.pcbi.1003474. eCollection 2014 Feb.

20.

Introduction of a new platform for parameter estimation of kinetically complex environmental systems.

Gharasoo M, Thullner M, Elsner M.

Environ Model Softw. 2017 Dec;98:12-20. doi: 10.1016/j.envsoft.2017.09.005.

Supplemental Content

Support Center