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Items: 1 to 20 of 94

1.

Exploiting the Genomic Diversity of Rice (Oryza sativa L.): SNP-Typing in 11 Early-Backcross Introgression-Breeding Populations.

Ali J, Aslam UM, Tariq R, Murugaiyan V, Schnable PS, Li D, Marfori-Nazarea CM, Hernandez JE, Arif M, Xu J, Li Z.

Front Plant Sci. 2018 Jun 22;9:849. doi: 10.3389/fpls.2018.00849. eCollection 2018.

2.

[Single nucleotide polymorphism (SNP) and its application in rice].

Liu CG, Zhang GQ.

Yi Chuan. 2006 Jun;28(6):737-44. Review. Chinese.

PMID:
16818440
3.
4.

Harnessing the hidden genetic diversity for improving multiple abiotic stress tolerance in rice (Oryza sativa L.).

Ali J, Xu JL, Gao YM, Ma XF, Meng LJ, Wang Y, Pang YL, Guan YS, Xu MR, Revilleza JE, Franje NJ, Zhou SC, Li ZK.

PLoS One. 2017 Mar 9;12(3):e0172515. doi: 10.1371/journal.pone.0172515. eCollection 2017.

5.

An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments.

Feltus FA, Wan J, Schulze SR, Estill JC, Jiang N, Paterson AH.

Genome Res. 2004 Sep;14(9):1812-9.

6.

Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations.

Spindel J, Wright M, Chen C, Cobb J, Gage J, Harrington S, Lorieux M, Ahmadi N, McCouch S.

Theor Appl Genet. 2013 Nov;126(11):2699-716. doi: 10.1007/s00122-013-2166-x. Epub 2013 Aug 6. Erratum in: Theor Appl Genet. 2016 Jan;129(1):201-2.

PMID:
23918062
7.

A high-density SNP genotyping array for rice biology and molecular breeding.

Chen H, Xie W, He H, Yu H, Chen W, Li J, Yu R, Yao Y, Zhang W, He Y, Tang X, Zhou F, Deng XW, Zhang Q.

Mol Plant. 2014 Mar;7(3):541-53. doi: 10.1093/mp/sst135. Epub 2013 Oct 11.

8.

Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications.

Thomson MJ, Singh N, Dwiyanti MS, Wang DR, Wright MH, Perez FA, DeClerck G, Chin JH, Malitic-Layaoen GA, Juanillas VM, Dilla-Ermita CJ, Mauleon R, Kretzschmar T, McCouch SR.

Rice (N Y). 2017 Aug 30;10(1):40. doi: 10.1186/s12284-017-0181-2.

9.

Genome-wide response to selection and genetic basis of cold tolerance in rice (Oryza sativa L.).

Zhang F, Ma XF, Gao YM, Hao XB, Li ZK.

BMC Genet. 2014 May 8;15:55. doi: 10.1186/1471-2156-15-55.

10.

Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing.

Djari A, Esquerré D, Weiss B, Martins F, Meersseman C, Boussaha M, Klopp C, Rocha D.

BMC Genomics. 2013 May 7;14:307. doi: 10.1186/1471-2164-14-307.

11.

Genome-wide SNP discovery and QTL mapping for fruit quality traits in inbred backcross lines (IBLs) of solanum pimpinellifolium using genotyping by sequencing.

Celik I, Gurbuz N, Uncu AT, Frary A, Doganlar S.

BMC Genomics. 2017 Jan 3;18(1):1. doi: 10.1186/s12864-016-3406-7.

12.

tGBS® genotyping-by-sequencing enables reliable genotyping of heterozygous loci.

Ott A, Liu S, Schnable JC, Yeh C', Wang KS, Schnable PS.

Nucleic Acids Res. 2017 Dec 1;45(21):e178. doi: 10.1093/nar/gkx853.

13.

Diversity analysis and genomic prediction of Sclerotinia resistance in sunflower using a new 25 K SNP genotyping array.

Livaja M, Unterseer S, Erath W, Lehermeier C, Wieseke R, Plieske J, Polley A, Luerßen H, Wieckhorst S, Mascher M, Hahn V, Ouzunova M, Schön CC, Ganal MW.

Theor Appl Genet. 2016 Feb;129(2):317-29. doi: 10.1007/s00122-015-2629-3. Epub 2015 Nov 4.

PMID:
26536890
14.

Rapid gene-based SNP and haplotype marker development in non-model eukaryotes using 3'UTR sequencing.

Koepke T, Schaeffer S, Krishnan V, Jiwan D, Harper A, Whiting M, Oraguzie N, Dhingra A.

BMC Genomics. 2012 Jan 12;13:18. doi: 10.1186/1471-2164-13-18.

15.

A whole-genome SNP array (RICE6K) for genomic breeding in rice.

Yu H, Xie W, Li J, Zhou F, Zhang Q.

Plant Biotechnol J. 2014 Jan;12(1):28-37. doi: 10.1111/pbi.12113. Epub 2013 Sep 13.

16.

SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population.

Boutet G, Alves Carvalho S, Falque M, Peterlongo P, Lhuillier E, Bouchez O, Lavaud C, Pilet-Nayel ML, Rivière N, Baranger A.

BMC Genomics. 2016 Feb 18;17:121. doi: 10.1186/s12864-016-2447-2.

17.

A strategy for genome-wide identification of gene based polymorphisms in rice reveals non-synonymous variation and functional genotypic markers.

Srivastava SK, Wolinski P, Pereira A.

PLoS One. 2014 Sep 19;9(9):e105335. doi: 10.1371/journal.pone.0105335. eCollection 2014.

18.

Genomic selection using low density marker panels with application to a sire line in pigs.

Wellmann R, Preuß S, Tholen E, Heinkel J, Wimmers K, Bennewitz J.

Genet Sel Evol. 2013 Jul 29;45:28. doi: 10.1186/1297-9686-45-28.

19.

Accuracy of genomic selection for alfalfa biomass yield in different reference populations.

Annicchiarico P, Nazzicari N, Li X, Wei Y, Pecetti L, Brummer EC.

BMC Genomics. 2015 Dec 1;16:1020. doi: 10.1186/s12864-015-2212-y.

20.

SNPs in stress-responsive rice genes: validation, genotyping, functional relevance and population structure.

Parida SK, Mukerji M, Singh AK, Singh NK, Mohapatra T.

BMC Genomics. 2012 Aug 25;13:426. doi: 10.1186/1471-2164-13-426.

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