Similar articles for PMID: 29939994

Year	Number of Results
2001	1
2003	2
2004	1
2006	1
2007	1
2008	2
2009	3
2010	4
2011	9
2012	10
2013	5
2014	21
2015	17
2016	19
2017	17
2018	17
2019	19
2020	16
2021	19
2022	8
2023	1
2024	0

1

Removing contaminants from databases of draft genomes.

Lu J, Salzberg SL. Lu J, et al. PLoS Comput Biol. 2018 Jun 25;14(6):e1006277. doi: 10.1371/journal.pcbi.1006277. eCollection 2018 Jun. PLoS Comput Biol. 2018. PMID: 29939994 Free PMC article.

2

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data.

Davis NM, Proctor DM, Holmes SP, Relman DA, Callahan BJ. Davis NM, et al. Microbiome. 2018 Dec 17;6(1):226. doi: 10.1186/s40168-018-0605-2. Microbiome. 2018. PMID: 30558668 Free PMC article.

3

Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.

Rotimi AM, Pierneef R, Reva ON. Rotimi AM, et al. BMC Bioinformatics. 2018 Aug 30;19(1):309. doi: 10.1186/s12859-018-2320-1. BMC Bioinformatics. 2018. PMID: 30165813 Free PMC article.

4

drVM: a new tool for efficient genome assembly of known eukaryotic viruses from metagenomes.

Lin HH, Liao YC. Lin HH, et al. Gigascience. 2017 Feb 1;6(2):1-10. doi: 10.1093/gigascience/gix003. Gigascience. 2017. PMID: 28369462 Free PMC article.

5

Fusobacterium Genomics Using MinION and Illumina Sequencing Enables Genome Completion and Correction.

Todd SM, Settlage RE, Lahmers KK, Slade DJ. Todd SM, et al. mSphere. 2018 Jul 5;3(4):e00269-18. doi: 10.1128/mSphere.00269-18. mSphere. 2018. PMID: 29976645 Free PMC article.

6

Species classifier choice is a key consideration when analysing low-complexity food microbiome data.

Walsh AM, Crispie F, O'Sullivan O, Finnegan L, Claesson MJ, Cotter PD. Walsh AM, et al. Microbiome. 2018 Mar 20;6(1):50. doi: 10.1186/s40168-018-0437-0. Microbiome. 2018. PMID: 29554948 Free PMC article.

7

The use of taxon-specific reference databases compromises metagenomic classification.

R Marcelino V, Holmes EC, Sorrell TC. R Marcelino V, et al. BMC Genomics. 2020 Feb 27;21(1):184. doi: 10.1186/s12864-020-6592-2. BMC Genomics. 2020. PMID: 32106809 Free PMC article.

8

MetaSort untangles metagenome assembly by reducing microbial community complexity.

Ji P, Zhang Y, Wang J, Zhao F. Ji P, et al. Nat Commun. 2017 Jan 23;8:14306. doi: 10.1038/ncomms14306. Nat Commun. 2017. PMID: 28112173 Free PMC article.

9

PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures.

Krawczyk PS, Lipinski L, Dziembowski A. Krawczyk PS, et al. Nucleic Acids Res. 2018 Apr 6;46(6):e35. doi: 10.1093/nar/gkx1321. Nucleic Acids Res. 2018. PMID: 29346586 Free PMC article.

10

PAIPline: pathogen identification in metagenomic and clinical next generation sequencing samples.

Andrusch A, Dabrowski PW, Klenner J, Tausch SH, Kohl C, Osman AA, Renard BY, Nitsche A. Andrusch A, et al. Bioinformatics. 2018 Sep 1;34(17):i715-i721. doi: 10.1093/bioinformatics/bty595. Bioinformatics. 2018. PMID: 30423069 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Results by year

Text availability

Article attribute

Article type

Publication date

180 results

Results by year