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Items: 1 to 20 of 108

1.

Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes.

Grove C, Cain S, Chen WJ, Davis P, Harris T, Howe KL, Kishore R, Lee R, Paulini M, Raciti D, Tuli MA, Van Auken K, Williams G; WormBase Consortium.

Methods Mol Biol. 2018;1757:399-470. doi: 10.1007/978-1-4939-7737-6_14.

2.

WormBase 2007.

Rogers A, Antoshechkin I, Bieri T, Blasiar D, Bastiani C, Canaran P, Chan J, Chen WJ, Davis P, Fernandes J, Fiedler TJ, Han M, Harris TW, Kishore R, Lee R, McKay S, Müller HM, Nakamura C, Ozersky P, Petcherski A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Yook K, Durbin R, Stein LD, Spieth J, Sternberg PW.

Nucleic Acids Res. 2008 Jan;36(Database issue):D612-7. Epub 2007 Nov 8.

3.

Using WormBase ParaSite: An Integrated Platform for Exploring Helminth Genomic Data.

Bolt BJ, Rodgers FH, Shafie M, Kersey PJ, Berriman M, Howe KL.

Methods Mol Biol. 2018;1757:471-491. doi: 10.1007/978-1-4939-7737-6_15.

PMID:
29761467
4.

WormBase: methods for data mining and comparative genomics.

Harris TW, Stein LD.

Methods Mol Biol. 2006;351:31-50. Review.

PMID:
16988424
5.

WormBase 2016: expanding to enable helminth genomic research.

Howe KL, Bolt BJ, Cain S, Chan J, Chen WJ, Davis P, Done J, Down T, Gao S, Grove C, Harris TW, Kishore R, Lee R, Lomax J, Li Y, Muller HM, Nakamura C, Nuin P, Paulini M, Raciti D, Schindelman G, Stanley E, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Wright A, Yook K, Berriman M, Kersey P, Schedl T, Stein L, Sternberg PW.

Nucleic Acids Res. 2016 Jan 4;44(D1):D774-80. doi: 10.1093/nar/gkv1217. Epub 2015 Nov 17.

6.

WormBase: new content and better access.

Bieri T, Blasiar D, Ozersky P, Antoshechkin I, Bastiani C, Canaran P, Chan J, Chen N, Chen WJ, Davis P, Fiedler TJ, Girard L, Han M, Harris TW, Kishore R, Lee R, McKay S, Müller HM, Nakamura C, Petcherski A, Rangarajan A, Rogers A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Durbin R, Stein LD, Sternberg PW, Spieth J.

Nucleic Acids Res. 2007 Jan;35(Database issue):D506-10. Epub 2006 Nov 11.

7.

WormBase: a multi-species resource for nematode biology and genomics.

Harris TW, Chen N, Cunningham F, Tello-Ruiz M, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Chan J, Chen CK, Chen WJ, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D411-7.

8.

WormBase: a comprehensive data resource for Caenorhabditis biology and genomics.

Chen N, Harris TW, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Canaran P, Chan J, Chen CK, Chen WJ, Cunningham F, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Pai S, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D383-9.

9.

WormBase: a comprehensive resource for nematode research.

Harris TW, Antoshechkin I, Bieri T, Blasiar D, Chan J, Chen WJ, De La Cruz N, Davis P, Duesbury M, Fang R, Fernandes J, Han M, Kishore R, Lee R, Müller HM, Nakamura C, Ozersky P, Petcherski A, Rangarajan A, Rogers A, Schindelman G, Schwarz EM, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Yook K, Durbin R, Stein LD, Spieth J, Sternberg PW.

Nucleic Acids Res. 2010 Jan;38(Database issue):D463-7. doi: 10.1093/nar/gkp952. Epub 2009 Nov 12.

10.

WormBase: better software, richer content.

Schwarz EM, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Canaran P, Chan J, Chen N, Chen WJ, Davis P, Fiedler TJ, Girard L, Harris TW, Kenny EE, Kishore R, Lawson D, Lee R, Müller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Spooner W, Tuli MA, Van Auken K, Wang D, Durbin R, Spieth J, Stein LD, Sternberg PW.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D475-8.

11.

WormBase as an integrated platform for the C. elegans ORFeome.

Chen N, Lawson D, Bradnam K, Harris TW, Stein LD.

Genome Res. 2004 Oct;14(10B):2155-61.

12.

WormBase 2014: new views of curated biology.

Harris TW, Baran J, Bieri T, Cabunoc A, Chan J, Chen WJ, Davis P, Done J, Grove C, Howe K, Kishore R, Lee R, Li Y, Muller HM, Nakamura C, Ozersky P, Paulini M, Raciti D, Schindelman G, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Wong JD, Yook K, Schedl T, Hodgkin J, Berriman M, Kersey P, Spieth J, Stein L, Sternberg PW.

Nucleic Acids Res. 2014 Jan;42(Database issue):D789-93. doi: 10.1093/nar/gkt1063. Epub 2013 Nov 4.

13.
14.

WormBase ParaSite - a comprehensive resource for helminth genomics.

Howe KL, Bolt BJ, Shafie M, Kersey P, Berriman M.

Mol Biochem Parasitol. 2017 Jul;215:2-10. doi: 10.1016/j.molbiopara.2016.11.005. Epub 2016 Nov 27.

15.

Methods and strategies for gene structure curation in WormBase.

Williams GW, Davis PA, Rogers AS, Bieri T, Ozersky P, Spieth J.

Database (Oxford). 2011 May 3;2011:baq039. doi: 10.1093/database/baq039. Print 2011.

16.

A Multi-Omics Database for Parasitic Nematodes and Trematodes.

Martin J, Tyagi R, Rosa BA, Mitreva M.

Methods Mol Biol. 2018;1757:371-397. doi: 10.1007/978-1-4939-7737-6_13.

17.

WormBase 2012: more genomes, more data, new website.

Yook K, Harris TW, Bieri T, Cabunoc A, Chan J, Chen WJ, Davis P, de la Cruz N, Duong A, Fang R, Ganesan U, Grove C, Howe K, Kadam S, Kishore R, Lee R, Li Y, Muller HM, Nakamura C, Nash B, Ozersky P, Paulini M, Raciti D, Rangarajan A, Schindelman G, Shi X, Schwarz EM, Ann Tuli M, Van Auken K, Wang D, Wang X, Williams G, Hodgkin J, Berriman M, Durbin R, Kersey P, Spieth J, Stein L, Sternberg PW.

Nucleic Acids Res. 2012 Jan;40(Database issue):D735-41. doi: 10.1093/nar/gkr954. Epub 2011 Nov 8.

18.

nGASP--the nematode genome annotation assessment project.

Coghlan A, Fiedler TJ, McKay SJ, Flicek P, Harris TW, Blasiar D; nGASP Consortium, Stein LD.

BMC Bioinformatics. 2008 Dec 19;9:549. doi: 10.1186/1471-2105-9-549.

19.

Textpresso: an ontology-based information retrieval and extraction system for biological literature.

Müller HM, Kenny EE, Sternberg PW.

PLoS Biol. 2004 Nov;2(11):e309. Epub 2004 Sep 21.

20.

WormBase: network access to the genome and biology of Caenorhabditis elegans.

Stein L, Sternberg P, Durbin R, Thierry-Mieg J, Spieth J.

Nucleic Acids Res. 2001 Jan 1;29(1):82-6.

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