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Items: 1 to 20 of 101

1.

Uniform resolution of compact identifiers for biomedical data.

Wimalaratne SM, Juty N, Kunze J, Janée G, McMurry JA, Beard N, Jimenez R, Grethe JS, Hermjakob H, Martone ME, Clark T.

Sci Data. 2018 May 8;5:180029. doi: 10.1038/sdata.2018.29.

2.

Identifiers.org and MIRIAM Registry: community resources to provide persistent identification.

Juty N, Le Novère N, Laibe C.

Nucleic Acids Res. 2012 Jan;40(Database issue):D580-6. doi: 10.1093/nar/gkr1097. Epub 2011 Dec 2.

3.

Towards the collaborative curation of the registry underlying Identifiers.org.

Juty N, Le Novère N, Hermjakob H, Laibe C.

Database (Oxford). 2013 Apr 12;2013:bat017. doi: 10.1093/database/bat017. Print 2013.

4.

SPARQL-enabled identifier conversion with Identifiers.org.

Wimalaratne SM, Bolleman J, Juty N, Katayama T, Dumontier M, Redaschi N, Le Novère N, Hermjakob H, Laibe C.

Bioinformatics. 2015 Jun 1;31(11):1875-7. doi: 10.1093/bioinformatics/btv064. Epub 2015 Jan 31.

5.

Biodiversity informatics: the challenge of linking data and the role of shared identifiers.

Page RD.

Brief Bioinform. 2008 Sep;9(5):345-54. doi: 10.1093/bib/bbn022. Epub 2008 Apr 29. Review.

PMID:
18445641
6.

Achieving human and machine accessibility of cited data in scholarly publications.

Starr J, Castro E, Crosas M, Dumontier M, Downs RR, Duerr R, Haak LL, Haendel M, Herman I, Hodson S, Hourclé J, Kratz JE, Lin J, Nielsen LH, Nurnberger A, Proell S, Rauber A, Sacchi S, Smith A, Taylor M, Clark T.

PeerJ Comput Sci. 2015;1. pii: e1.

7.

Actionable, long-term stable and semantic web compatible identifiers for access to biological collection objects.

Güntsch A, Hyam R, Hagedorn G, Chagnoux S, Röpert D, Casino A, Droege G, Glöckler F, Gödderz K, Groom Q, Hoffmann J, Holleman A, Kempa M, Koivula H, Marhold K, Nicolson N, Smith VS, Triebel D.

Database (Oxford). 2017 Jan 1;2017(1). doi: 10.1093/database/bax003.

8.

Integr8: enhanced inter-operability of European molecular biology databases.

Kersey PJ, Morris L, Hermjakob H, Apweiler R.

Methods Inf Med. 2003;42(2):154-60.

PMID:
12743652
9.

The Resource Identification Initiative: A cultural shift in publishing.

Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan S, Washington N, Zudilova-Seinstra E, Vasilevsky N; Resource Identification Initiative Members are listed here: https://www.force11.org/node/4463/members.

Version 2. F1000Res. 2015 May 29 [revised 2015 Jan 1];4:134. doi: 10.12688/f1000research.6555.2. eCollection 2015.

10.

The Resource Identification Initiative: A Cultural Shift in Publishing.

Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SS, Washington N, Zudilova-Seinstra E, Vasilevsky N; RINL Resource Identification Initiative.

Neuroinformatics. 2016 Apr;14(2):169-82. doi: 10.1007/s12021-015-9284-3.

11.

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.

McMurry JA, Juty N, Blomberg N, Burdett T, Conlin T, Conte N, Courtot M, Deck J, Dumontier M, Fellows DK, Gonzalez-Beltran A, Gormanns P, Grethe J, Hastings J, Hériché JK, Hermjakob H, Ison JC, Jimenez RC, Jupp S, Kunze J, Laibe C, Le Novère N, Malone J, Martin MJ, McEntyre JR, Morris C, Muilu J, Müller W, Rocca-Serra P, Sansone SA, Sariyar M, Snoep JL, Soiland-Reyes S, Stanford NJ, Swainston N, Washington N, Williams AR, Wimalaratne SM, Winfree LM, Wolstencroft K, Goble C, Mungall CJ, Haendel MA, Parkinson H.

PLoS Biol. 2017 Jun 29;15(6):e2001414. doi: 10.1371/journal.pbio.2001414. eCollection 2017 Jun.

12.

cual-id: Globally Unique, Correctable, and Human-Friendly Sample Identifiers for Comparative Omics Studies.

Chase JH, Bolyen E, Rideout JR, Caporaso JG.

mSystems. 2015 Dec 22;1(1). pii: e00010-15. eCollection 2016 Jan-Feb.

13.

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.

Côté RG, Jones P, Martens L, Kerrien S, Reisinger F, Lin Q, Leinonen R, Apweiler R, Hermjakob H.

BMC Bioinformatics. 2007 Oct 18;8:401.

14.

Community next steps for making globally unique identifiers work for biocollections data.

Guralnick RP, Cellinese N, Deck J, Pyle RL, Kunze J, Penev L, Walls R, Hagedorn G, Agosti D, Wieczorek J, Catapano T, Page RD.

Zookeys. 2015 Apr 6;(494):133-54. doi: 10.3897/zookeys.494.9352. eCollection 2015.

15.

The Resource Identification Initiative: a cultural shift in publishing.

Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SC, Washington N, Zudilova-Seinstra E, Vasilevsky N; RINL Resource Identification Initiative.

Brain Behav. 2015 Dec 8;6(1):e00417. doi: 10.1002/brb3.417. eCollection 2016 Jan.

16.

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats.

Ison J, Kalas M, Jonassen I, Bolser D, Uludag M, McWilliam H, Malone J, Lopez R, Pettifer S, Rice P.

Bioinformatics. 2013 May 15;29(10):1325-32. doi: 10.1093/bioinformatics/btt113. Epub 2013 Mar 11.

17.

UniChem: a unified chemical structure cross-referencing and identifier tracking system.

Chambers J, Davies M, Gaulton A, Hersey A, Velankar S, Petryszak R, Hastings J, Bellis L, McGlinchey S, Overington JP.

J Cheminform. 2013 Jan 14;5(1):3. doi: 10.1186/1758-2946-5-3.

18.

A database of unique protein sequence identifiers for proteome studies.

Babnigg G, Giometti CS.

Proteomics. 2006 Aug;6(16):4514-22.

PMID:
16858731
19.

The Resource Identification Initiative: A Cultural Shift in Publishing.

Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SC, Washington N, Zudilova-Seinstra E, Vasilevsky N.

J Comp Neurol. 2016 Jan 1;524(1):8-22. doi: 10.1002/cne.23913.

20.

PIBAS FedSPARQL: a web-based platform for integration and exploration of bioinformatics datasets.

Djokic-Petrovic M, Cvjetkovic V, Yang J, Zivanovic M, Wild DJ.

J Biomed Semantics. 2017 Sep 20;8(1):42. doi: 10.1186/s13326-017-0151-z.

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