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Items: 1 to 20 of 96

1.

Comparison of protein expression between human livers and the hepatic cell lines HepG2, Hep3B, and Huh7 using SWATH and MRM-HR proteomics: Focusing on drug-metabolizing enzymes.

Shi J, Wang X, Lyu L, Jiang H, Zhu HJ.

Drug Metab Pharmacokinet. 2018 Apr;33(2):133-140. doi: 10.1016/j.dmpk.2018.03.003. Epub 2018 Mar 10.

PMID:
29610054
2.

Large-scale multiplex absolute protein quantification of drug-metabolizing enzymes and transporters in human intestine, liver, and kidney microsomes by SWATH-MS: Comparison with MRM/SRM and HR-MRM/PRM.

Nakamura K, Hirayama-Kurogi M, Ito S, Kuno T, Yoneyama T, Obuchi W, Terasaki T, Ohtsuki S.

Proteomics. 2016 Aug;16(15-16):2106-17. doi: 10.1002/pmic.201500433. Epub 2016 Jul 8.

PMID:
27197958
3.

New Insight of Common Regulatory Pathways in Human Trabecular Meshwork Cells in Response to Dexamethasone and Prednisolone Using an Integrated Quantitative Proteomics: SWATH and MRM-HR Mass Spectrometry.

Shan SW, Do CW, Lam TC, Kong RPW, Li KK, Chun KM, Stamer WD, To CH.

J Proteome Res. 2017 Oct 6;16(10):3753-3765. doi: 10.1021/acs.jproteome.7b00449. Epub 2017 Sep 27.

PMID:
28920441
4.

A review on mass spectrometry-based quantitative proteomics: Targeted and data independent acquisition.

Vidova V, Spacil Z.

Anal Chim Acta. 2017 Apr 29;964:7-23. doi: 10.1016/j.aca.2017.01.059. Epub 2017 Feb 2. Review.

PMID:
28351641
5.

Biomarker Discovery and Verification of Esophageal Squamous Cell Carcinoma Using Integration of SWATH/MRM.

Hou G, Lou X, Sun Y, Xu S, Zi J, Wang Q, Zhou B, Han B, Wu L, Zhao X, Lin L, Liu S.

J Proteome Res. 2015 Sep 4;14(9):3793-803. doi: 10.1021/acs.jproteome.5b00438. Epub 2015 Aug 18. Erratum in: J Proteome Res. 2016 Feb 5;15(2):680.

PMID:
26224564
6.

Similarities and differences in the expression of drug-metabolizing enzymes between human hepatic cell lines and primary human hepatocytes.

Guo L, Dial S, Shi L, Branham W, Liu J, Fang JL, Green B, Deng H, Kaput J, Ning B.

Drug Metab Dispos. 2011 Mar;39(3):528-38. doi: 10.1124/dmd.110.035873. Epub 2010 Dec 13.

7.

Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry.

Selevsek N, Chang CY, Gillet LC, Navarro P, Bernhardt OM, Reiter L, Cheng LY, Vitek O, Aebersold R.

Mol Cell Proteomics. 2015 Mar;14(3):739-49. doi: 10.1074/mcp.M113.035550. Epub 2015 Jan 5.

8.

Comparing Multiple Reaction Monitoring and Sequential Window Acquisition of All Theoretical Mass Spectra for the Relative Quantification of Barley Gluten in Selectively Bred Barley Lines.

Colgrave ML, Byrne K, Blundell M, Heidelberger S, Lane CS, Tanner GJ, Howitt CA.

Anal Chem. 2016 Sep 20;88(18):9127-35. doi: 10.1021/acs.analchem.6b02108. Epub 2016 Aug 29.

PMID:
27533879
9.

Comparison of targeted proteomics approaches for detecting and quantifying proteins derived from human cancer tissues.

Faktor J, Sucha R, Paralova V, Liu Y, Bouchal P.

Proteomics. 2017 Mar;17(5). doi: 10.1002/pmic.201600323. Epub 2017 Feb 22.

PMID:
27966270
10.

Multiplex and Label-Free Relative Quantification Approach for Studying Protein Abundance of Drug Metabolizing Enzymes in Human Liver Microsomes Using SWATH-MS.

Jamwal R, Barlock BJ, Adusumalli S, Ogasawara K, Simons BL, Akhlaghi F.

J Proteome Res. 2017 Nov 3;16(11):4134-4143. doi: 10.1021/acs.jproteome.7b00505. Epub 2017 Oct 10.

PMID:
28944677
11.

The regulated expression of erythropoietin by two human hepatoma cell lines.

Goldberg MA, Glass GA, Cunningham JM, Bunn HF.

Proc Natl Acad Sci U S A. 1987 Nov;84(22):7972-6.

12.

Expression and regulation of constitutive and acute phase serum amyloid A mRNAs in hepatic and non-hepatic cell lines.

Steel DM, Donoghue FC, O'Neill RM, Uhlar CM, Whitehead AS.

Scand J Immunol. 1996 Nov;44(5):493-500.

PMID:
8947601
13.

Comparison of label-free and label-based strategies for proteome analysis of hepatoma cell lines.

Megger DA, Pott LL, Ahrens M, Padden J, Bracht T, Kuhlmann K, Eisenacher M, Meyer HE, Sitek B.

Biochim Biophys Acta. 2014 May;1844(5):967-76. doi: 10.1016/j.bbapap.2013.07.017. Epub 2013 Aug 14.

PMID:
23954498
14.

Optimization of Acquisition and Data-Processing Parameters for Improved Proteomic Quantification by Sequential Window Acquisition of All Theoretical Fragment Ion Mass Spectrometry.

Li S, Cao Q, Xiao W, Guo Y, Yang Y, Duan X, Shui W.

J Proteome Res. 2017 Feb 3;16(2):738-747. doi: 10.1021/acs.jproteome.6b00767. Epub 2017 Jan 3.

PMID:
27995803
15.

SWATH enables precise label-free quantification on proteome scale.

Huang Q, Yang L, Luo J, Guo L, Wang Z, Yang X, Jin W, Fang Y, Ye J, Shan B, Zhang Y.

Proteomics. 2015 Apr;15(7):1215-23. doi: 10.1002/pmic.201400270.

PMID:
25560523
16.

Global Proteomic Analysis of Human Liver Microsomes: Rapid Characterization and Quantification of Hepatic Drug-Metabolizing Enzymes.

Achour B, Al Feteisi H, Lanucara F, Rostami-Hodjegan A, Barber J.

Drug Metab Dispos. 2017 Jun;45(6):666-675. doi: 10.1124/dmd.116.074732. Epub 2017 Apr 3.

17.

Comparative analysis of phase I and II enzyme activities in 5 hepatic cell lines identifies Huh-7 and HCC-T cells with the highest potential to study drug metabolism.

Lin J, Schyschka L, Mühl-Benninghaus R, Neumann J, Hao L, Nussler N, Dooley S, Liu L, Stöckle U, Nussler AK, Ehnert S.

Arch Toxicol. 2012 Jan;86(1):87-95. doi: 10.1007/s00204-011-0733-y. Epub 2011 Jul 7.

PMID:
21735230
18.

Strategic shotgun proteomics approach for efficient construction of an expression map of targeted protein families in hepatoma cell lines.

Lee CL, Hsiao HH, Lin CW, Wu SP, Huang SY, Wu CY, Wang AH, Khoo KH.

Proteomics. 2003 Dec;3(12):2472-86.

PMID:
14673797
19.

Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry.

Collins BC, Hunter CL, Liu Y, Schilling B, Rosenberger G, Bader SL, Chan DW, Gibson BW, Gingras AC, Held JM, Hirayama-Kurogi M, Hou G, Krisp C, Larsen B, Lin L, Liu S, Molloy MP, Moritz RL, Ohtsuki S, Schlapbach R, Selevsek N, Thomas SN, Tzeng SC, Zhang H, Aebersold R.

Nat Commun. 2017 Aug 21;8(1):291. doi: 10.1038/s41467-017-00249-5.

20.

Building high-quality assay libraries for targeted analysis of SWATH MS data.

Schubert OT, Gillet LC, Collins BC, Navarro P, Rosenberger G, Wolski WE, Lam H, Amodei D, Mallick P, MacLean B, Aebersold R.

Nat Protoc. 2015 Mar;10(3):426-41. doi: 10.1038/nprot.2015.015. Epub 2015 Feb 12.

PMID:
25675208

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