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Items: 1 to 20 of 127

1.

3C and 3C-based techniques: the powerful tools for spatial genome organization deciphering.

Han J, Zhang Z, Wang K.

Mol Cytogenet. 2018 Mar 9;11:21. doi: 10.1186/s13039-018-0368-2. eCollection 2018. Review.

2.

Determination of the 3D Genome Organization of Bacteria Using Hi-C.

Crémazy FG, Rashid FM, Haycocks JR, Lamberte LE, Grainger DC, Dame RT.

Methods Mol Biol. 2018;1837:3-18. doi: 10.1007/978-1-4939-8675-0_1.

PMID:
30109602
3.

Technical Review: A Hitchhiker's Guide to Chromosome Conformation Capture.

Grob S, Cavalli G.

Methods Mol Biol. 2018;1675:233-246. doi: 10.1007/978-1-4939-7318-7_14. Review.

PMID:
29052195
4.

Discovering genome regulation with 3C and 3C-related technologies.

Ethier SD, Miura H, Dostie J.

Biochim Biophys Acta. 2012 May;1819(5):401-10. doi: 10.1016/j.bbagrm.2011.12.004. Epub 2011 Dec 20. Review.

PMID:
22207201
5.

Chromosome conformation capture technologies and their impact in understanding genome function.

Sati S, Cavalli G.

Chromosoma. 2017 Feb;126(1):33-44. doi: 10.1007/s00412-016-0593-6. Epub 2016 Apr 30. Review.

PMID:
27130552
6.

An Overview of Genome Organization and How We Got There: from FISH to Hi-C.

Fraser J, Williamson I, Bickmore WA, Dostie J.

Microbiol Mol Biol Rev. 2015 Sep;79(3):347-72. doi: 10.1128/MMBR.00006-15. Review.

7.

Practical Analysis of Hi-C Data: Generating A/B Compartment Profiles.

Miura H, Poonperm R, Takahashi S, Hiratani I.

Methods Mol Biol. 2018;1861:221-245. doi: 10.1007/978-1-4939-8766-5_16.

PMID:
30218370
8.

5C-ID: Increased resolution Chromosome-Conformation-Capture-Carbon-Copy with in situ 3C and double alternating primer design.

Kim JH, Titus KR, Gong W, Beagan JA, Cao Z, Phillips-Cremins JE.

Methods. 2018 Jun 1;142:39-46. doi: 10.1016/j.ymeth.2018.05.005. Epub 2018 May 24.

PMID:
29772275
9.

Modelling genome-wide topological associating domains in mouse embryonic stem cells.

Zhan Y, Giorgetti L, Tiana G.

Chromosome Res. 2017 Mar;25(1):5-14. doi: 10.1007/s10577-016-9544-6. Epub 2017 Jan 20.

10.

Microscopy-Based Chromosome Conformation Capture Enables Simultaneous Visualization of Genome Organization and Transcription in Intact Organisms.

Cardozo Gizzi AM, Cattoni DI, Fiche JB, Espinola SM, Gurgo J, Messina O, Houbron C, Ogiyama Y, Papadopoulos GL, Cavalli G, Lagha M, Nollmann M.

Mol Cell. 2019 Apr 4;74(1):212-222.e5. doi: 10.1016/j.molcel.2019.01.011. Epub 2019 Feb 19.

PMID:
30795893
11.

Sim3C: simulation of Hi-C and Meta3C proximity ligation sequencing technologies.

DeMaere MZ, Darling AE.

Gigascience. 2018 Feb 1;7(2). doi: 10.1093/gigascience/gix103.

12.

Unraveling the 3D genome of human malaria parasites.

Batugedara G, Le Roch KG.

Semin Cell Dev Biol. 2018 Jul 27. pii: S1084-9521(18)30152-6. doi: 10.1016/j.semcdb.2018.07.015. [Epub ahead of print] Review.

PMID:
30009946
13.

Two main stream methods analysis and visual 3D genome architecture.

Fu S, Zhang L, Lv J, Zhu B, Wang W, Wang X.

Semin Cell Dev Biol. 2018 Aug 16. pii: S1084-9521(17)30589-X. doi: 10.1016/j.semcdb.2018.07.011. [Epub ahead of print] Review.

PMID:
30059749
14.

Using DNase Hi-C techniques to map global and local three-dimensional genome architecture at high resolution.

Ma W, Ay F, Lee C, Gulsoy G, Deng X, Cook S, Hesson J, Cavanaugh C, Ware CB, Krumm A, Shendure J, Blau CA, Disteche CM, Noble WS, Duan Z.

Methods. 2018 Jun 1;142:59-73. doi: 10.1016/j.ymeth.2018.01.014. Epub 2018 Jan 31.

PMID:
29382556
15.

Detecting Long-Range Enhancer-Promoter Interactions by Quantitative Chromosome Conformation Capture.

Deng W, Blobel GA.

Methods Mol Biol. 2017;1468:51-62. doi: 10.1007/978-1-4939-4035-6_6.

PMID:
27662870
16.

Circular Chromosome Conformation Capture in Plants.

Grob S.

Methods Mol Biol. 2017;1610:73-92. doi: 10.1007/978-1-4939-7003-2_6.

PMID:
28439858
17.

Insights about genome function from spatial organization of the genome.

Roy SS, Mukherjee AK, Chowdhury S.

Hum Genomics. 2018 Feb 20;12(1):8. doi: 10.1186/s40246-018-0140-z. Review.

18.

Chromosome organization in the nucleus - charting new territory across the Hi-Cs.

Dostie J, Bickmore WA.

Curr Opin Genet Dev. 2012 Apr;22(2):125-31. doi: 10.1016/j.gde.2011.12.006. Epub 2012 Jan 19. Review.

PMID:
22265226
19.

Multiplexed chromosome conformation capture sequencing for rapid genome-scale high-resolution detection of long-range chromatin interactions.

Stadhouders R, Kolovos P, Brouwer R, Zuin J, van den Heuvel A, Kockx C, Palstra RJ, Wendt KS, Grosveld F, van Ijcken W, Soler E.

Nat Protoc. 2013 Mar;8(3):509-24. doi: 10.1038/nprot.2013.018. Epub 2013 Feb 14.

PMID:
23411633
20.

Structural heterogeneity and functional diversity of topologically associating domains in mammalian genomes.

Wang XT, Dong PF, Zhang HY, Peng C.

Nucleic Acids Res. 2015 Sep 3;43(15):7237-46. doi: 10.1093/nar/gkv684. Epub 2015 Jul 6.

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