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Items: 1 to 20 of 106

1.

Chromatin Immunoprecipitation Sequencing (ChIP-Seq) for Transcription Factors and Chromatin Factors in Arabidopsis thaliana Roots: From Material Collection to Data Analysis.

Cortijo S, Charoensawan V, Roudier F, Wigge PA.

Methods Mol Biol. 2018;1761:231-248. doi: 10.1007/978-1-4939-7747-5_18.

PMID:
29525962
2.
3.

Chromatin immunoprecipitation and multiplex sequencing (ChIP-Seq) to identify global transcription factor binding sites in the nematode Caenorhabditis elegans.

Brdlik CM, Niu W, Snyder M.

Methods Enzymol. 2014;539:89-111. doi: 10.1016/B978-0-12-420120-0.00007-4.

PMID:
24581441
4.

Profiling of transcription factor binding events by chromatin immunoprecipitation sequencing (ChIP-seq).

Song L, Koga Y, Ecker JR.

Curr Protoc Plant Biol. 2016;1(2):293-306. doi: 10.1002/cppb.20014. Epub 2016 Jun 10.

5.

Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila.

Ghavi-Helm Y, Zhao B, Furlong EE.

Methods Mol Biol. 2016;1478:263-277. Review.

PMID:
27730588
6.

Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP).

Kaufmann K, Muiño JM, Østerås M, Farinelli L, Krajewski P, Angenent GC.

Nat Protoc. 2010 Mar;5(3):457-72. doi: 10.1038/nprot.2009.244. Epub 2010 Feb 18.

PMID:
20203663
7.

Analyzing transcription factor occupancy during embryo development using ChIP-seq.

Ghavi-Helm Y, Furlong EE.

Methods Mol Biol. 2012;786:229-45. doi: 10.1007/978-1-61779-292-2_14.

PMID:
21938630
8.

μChIP-Seq for Genome-Wide Mapping of In Vivo TF-DNA Interactions in Arabidopsis Root Protoplasts.

Para A, Li Y, Coruzzi GM.

Methods Mol Biol. 2018;1761:249-261. doi: 10.1007/978-1-4939-7747-5_19.

PMID:
29525963
9.

Chromatin analyses of Zymoseptoria tritici: Methods for chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq).

Soyer JL, Möller M, Schotanus K, Connolly LR, Galazka JM, Freitag M, Stukenbrock EH.

Fungal Genet Biol. 2015 Jun;79:63-70. doi: 10.1016/j.fgb.2015.03.006. Epub 2015 Apr 7.

10.

Expresso: A database and web server for exploring the interaction of transcription factors and their target genes in Arabidopsis thaliana using ChIP-Seq peak data.

Aghamirzaie D, Raja Velmurugan K, Wu S, Altarawy D, Heath LS, Grene R.

F1000Res. 2017 Mar 28;6:372. doi: 10.12688/f1000research.10041.1. eCollection 2017.

11.

DNA-Binding Factor Target Identification by Chromatin Immunoprecipitation (ChIP) in Plants.

Posé D, Yant L.

Methods Mol Biol. 2016;1363:25-35. doi: 10.1007/978-1-4939-3115-6_3.

PMID:
26577778
13.

Quantitatively profiling genome-wide patterns of histone modifications in Arabidopsis thaliana using ChIP-seq.

Luo C, Lam E.

Methods Mol Biol. 2014;1112:177-93. doi: 10.1007/978-1-62703-773-0_12.

PMID:
24478015
14.

Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond.

Mundade R, Ozer HG, Wei H, Prabhu L, Lu T.

Cell Cycle. 2014;13(18):2847-52. doi: 10.4161/15384101.2014.949201. Review.

15.

PROTOCOLS: Chromatin Immunoprecipitation from Arabidopsis Tissues.

Yamaguchi N, Winter CM, Wu MF, Kwon CS, William DA, Wagner D.

Arabidopsis Book. 2014 Feb 17;12:e0170. doi: 10.1199/tab.0170. eCollection 2014.

16.

Chromatin Immunoprecipitation for Identification of Protein-DNA Interactions in Human Cells.

Larsen BD, Madsen MR, Nielsen R, Mandrup S.

Methods Mol Biol. 2018;1794:335-352. doi: 10.1007/978-1-4939-7871-7_24.

PMID:
29855970
17.

ChIP-seq analysis of histone modifications at the core of the Arabidopsis circadian clock.

Malapeira J, Mas P.

Methods Mol Biol. 2014;1158:57-69. doi: 10.1007/978-1-4939-0700-7_4.

PMID:
24792044
18.

Efficient Preparation of High-Complexity ChIP-Seq Profiles from Early Xenopus Embryos.

Gentsch GE, Smith JC.

Methods Mol Biol. 2017;1507:23-42.

PMID:
27832530
19.

Chromatin Immunoprecipitation (ChIP) Protocol for Low-abundance Embryonic Samples.

Rehimi R, Bartusel M, Solinas F, Altmüller J, Rada-Iglesias A.

J Vis Exp. 2017 Aug 29;(126). doi: 10.3791/56186.

PMID:
28872116
20.

Analysis of in vivo transcription factor recruitment by chromatin immunoprecipitation of mouse embryonic kidney.

Heliot C, Cereghini S.

Methods Mol Biol. 2012;886:275-91. doi: 10.1007/978-1-61779-851-1_25.

PMID:
22639270

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