Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 104

1.

Summarizing performance for genome scale measurement of miRNA: reference samples and metrics.

Pine PS, Lund SP, Parsons JR, Vang LK, Mahabal AA, Cinquini L, Kelly SC, Kincaid H, Crichton DJ, Spira A, Liu G, Gower AC, Pass HI, Goparaju C, Dubinett SM, Krysan K, Stass SA, Kukuruga D, Van Keuren-Jensen K, Courtright-Lim A, Thompson KL, Rosenzweig BA, Sorbara L, Srivastava S, Salit ML.

BMC Genomics. 2018 Mar 6;19(1):180. doi: 10.1186/s12864-018-4496-1.

2.

Cell-based reference samples designed with specific differences in microRNA biomarkers.

Pine PS, Lund SP, Stass SA, Kukuruga D, Jiang F, Sorbara L, Srivastava S, Salit M.

BMC Biotechnol. 2018 Mar 20;18(1):17. doi: 10.1186/s12896-018-0423-4.

3.

Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures.

Munro SA, Lund SP, Pine PS, Binder H, Clevert DA, Conesa A, Dopazo J, Fasold M, Hochreiter S, Hong H, Jafari N, Kreil DP, Łabaj PP, Li S, Liao Y, Lin SM, Meehan J, Mason CE, Santoyo-Lopez J, Setterquist RA, Shi L, Shi W, Smyth GK, Stralis-Pavese N, Su Z, Tong W, Wang C, Wang J, Xu J, Ye Z, Yang Y, Yu Y, Salit M.

Nat Commun. 2014 Sep 25;5:5125. doi: 10.1038/ncomms6125.

PMID:
25254650
4.

Evaluation of the External RNA Controls Consortium (ERCC) reference material using a modified Latin square design.

Pine PS, Munro SA, Parsons JR, McDaniel J, Lucas AB, Lozach J, Myers TG, Su Q, Jacobs-Helber SM, Salit M.

BMC Biotechnol. 2016 Jun 24;16(1):54. doi: 10.1186/s12896-016-0281-x.

5.

Evaluation of methodologies for microRNA biomarker detection by next generation sequencing.

Coenen-Stass AML, Magen I, Brooks T, Ben-Dov IZ, Greensmith L, Hornstein E, Fratta P.

RNA Biol. 2018;15(8):1133-1145. doi: 10.1080/15476286.2018.1514236. Epub 2018 Sep 18.

6.

Comparison of hepatocellular carcinoma miRNA expression profiling as evaluated by next generation sequencing and microarray.

Murakami Y, Tanahashi T, Okada R, Toyoda H, Kumada T, Enomoto M, Tamori A, Kawada N, Taguchi YH, Azuma T.

PLoS One. 2014 Sep 12;9(9):e106314. doi: 10.1371/journal.pone.0106314. eCollection 2014. Erratum in: PLoS One. 2014;9(12):e116434.

7.

Identification of suitable reference genes for hepatic microRNA quantitation.

Lamba V, Ghodke-Puranik Y, Guan W, Lamba JK.

BMC Res Notes. 2014 Mar 7;7:129. doi: 10.1186/1756-0500-7-129.

8.

High-throughput approaches for microRNA expression analysis.

Dedeoğlu BG.

Methods Mol Biol. 2014;1107:91-103. doi: 10.1007/978-1-62703-748-8_6.

PMID:
24272433
9.

MicroRNA Profiling in Aqueous Humor of Individual Human Eyes by Next-Generation Sequencing.

Wecker T, Hoffmeier K, Plötner A, Grüning BA, Horres R, Backofen R, Reinhard T, Schlunck G.

Invest Ophthalmol Vis Sci. 2016 Apr;57(4):1706-13. doi: 10.1167/iovs.15-17828.

PMID:
27064390
10.

Whole-genome RT-qPCR microRNA expression profiling.

Mestdagh P, Derveaux S, Vandesompele J.

Methods Mol Biol. 2012;815:121-30. doi: 10.1007/978-1-61779-424-7_10.

PMID:
22130988
11.

Analysis of miRNA expression profiles in breast cancer using biclustering.

Fiannaca A, La Rosa M, La Paglia L, Rizzo R, Urso A.

BMC Bioinformatics. 2015;16 Suppl 4:S7. doi: 10.1186/1471-2105-16-S4-S7. Epub 2015 Feb 23.

12.

Identifying transcriptional miRNA biomarkers by integrating high-throughput sequencing and real-time PCR data.

Rahmann S, Martin M, Schulte JH, Köster J, Marschall T, Schramm A.

Methods. 2013 Jan;59(1):154-63. doi: 10.1016/j.ymeth.2012.10.005. Epub 2012 Oct 23.

PMID:
23098880
13.

MicroRNA Expression Analysis: Next-Generation Sequencing.

Liu P.

Methods Mol Biol. 2018;1783:171-183. doi: 10.1007/978-1-4939-7834-2_8.

PMID:
29767362
14.

Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood.

Vaz C, Ahmad HM, Sharma P, Gupta R, Kumar L, Kulshreshtha R, Bhattacharya A.

BMC Genomics. 2010 May 7;11:288. doi: 10.1186/1471-2164-11-288.

15.

Normalization matters: tracking the best strategy for sperm miRNA quantification.

Corral-Vazquez C, Blanco J, Salas-Huetos A, Vidal F, Anton E.

Mol Hum Reprod. 2017 Jan;23(1):45-53. doi: 10.1093/molehr/gaw072. Epub 2016 Dec 8.

PMID:
27932553
16.
17.

MicroRNA Stability in FFPE Tissue Samples: Dependence on GC Content.

Kakimoto Y, Tanaka M, Kamiguchi H, Ochiai E, Osawa M.

PLoS One. 2016 Sep 20;11(9):e0163125. doi: 10.1371/journal.pone.0163125. eCollection 2016.

18.

Genome-Wide Comparison of Next-Generation Sequencing and qPCR Platforms for microRNA Profiling in Serum.

Blondal T, Brunetto MR, Cavallone D, Mikkelsen M, Thorsen M, Mang Y, Pinheiro H, Bonino F, Mouritzen P.

Methods Mol Biol. 2017;1580:21-44. doi: 10.1007/978-1-4939-6866-4_3.

PMID:
28439824
19.

Next-Generation Sequencing for MicroRNA Expression Profile.

Hu Y, Lan W, Miller D.

Methods Mol Biol. 2017;1617:169-177. doi: 10.1007/978-1-4939-7046-9_12.

PMID:
28540684
20.

MicroRNA expression profiling to identify and validate reference genes for relative quantification in colorectal cancer.

Chang KH, Mestdagh P, Vandesompele J, Kerin MJ, Miller N.

BMC Cancer. 2010 Apr 29;10:173. doi: 10.1186/1471-2407-10-173.

Supplemental Content

Support Center