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Items: 1 to 20 of 111


Detection of stable community structures within gut microbiota co-occurrence networks from different human populations.

Jackson MA, Bonder MJ, Kuncheva Z, Zierer J, Fu J, Kurilshikov A, Wijmenga C, Zhernakova A, Bell JT, Spector TD, Steves CJ.

PeerJ. 2018 Feb 7;6:e4303. doi: 10.7717/peerj.4303. eCollection 2018.


Microbial co-occurrence relationships in the human microbiome.

Faust K, Sathirapongsasuti JF, Izard J, Segata N, Gevers D, Raes J, Huttenhower C.

PLoS Comput Biol. 2012;8(7):e1002606. doi: 10.1371/journal.pcbi.1002606. Epub 2012 Jul 12.


Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity.

Parfrey LW, Walters WA, Lauber CL, Clemente JC, Berg-Lyons D, Teiling C, Kodira C, Mohiuddin M, Brunelle J, Driscoll M, Fierer N, Gilbert JA, Knight R.

Front Microbiol. 2014 Jun 19;5:298. doi: 10.3389/fmicb.2014.00298. eCollection 2014.


Moderate Exercise Has Limited but Distinguishable Effects on the Mouse Microbiome.

Lamoureux EV, Grandy SA, Langille MGI.

mSystems. 2017 Aug 22;2(4). pii: e00006-17. doi: 10.1128/mSystems.00006-17. eCollection 2017 Jul-Aug.


Molecular Characterization and Meta-Analysis of Gut Microbial Communities Illustrate Enrichment of Prevotella and Megasphaera in Indian Subjects.

Bhute S, Pande P, Shetty SA, Shelar R, Mane S, Kumbhare SV, Gawali A, Makhani H, Navandar M, Dhotre D, Lubree H, Agarwal D, Patil R, Ozarkar S, Ghaskadbi S, Yajnik C, Juvekar S, Makharia GK, Shouche YS.

Front Microbiol. 2016 May 9;7:660. doi: 10.3389/fmicb.2016.00660. eCollection 2016.


An Integrated Metabolomic and Microbiome Analysis Identified Specific Gut Microbiota Associated with Fecal Cholesterol and Coprostanol in Clostridium difficile Infection.

Antharam VC, McEwen DC, Garrett TJ, Dossey AT, Li EC, Kozlov AN, Mesbah Z, Wang GP.

PLoS One. 2016 Feb 12;11(2):e0148824. doi: 10.1371/journal.pone.0148824. eCollection 2016.


Sewage reflects the microbiomes of human populations.

Newton RJ, McLellan SL, Dila DK, Vineis JH, Morrison HG, Eren AM, Sogin ML.

MBio. 2015 Feb 24;6(2):e02574. doi: 10.1128/mBio.02574-14.


Systematic prediction of health-relevant human-microbial co-metabolism through a computational framework.

Heinken A, Thiele I.

Gut Microbes. 2015;6(2):120-30. doi: 10.1080/19490976.2015.1023494.


Microbial "social networks".

Fernandez M, Riveros JD, Campos M, Mathee K, Narasimhan G.

BMC Genomics. 2015;16 Suppl 11:S6. doi: 10.1186/1471-2164-16-S11-S6. Epub 2015 Nov 10.


Demonstrating microbial co-occurrence pattern analyses within and between ecosystems.

Williams RJ, Howe A, Hofmockel KS.

Front Microbiol. 2014 Jul 18;5:358. doi: 10.3389/fmicb.2014.00358. eCollection 2014.


Genome-resolved metaproteomic characterization of preterm infant gut microbiota development reveals species-specific metabolic shifts and variabilities during early life.

Xiong W, Brown CT, Morowitz MJ, Banfield JF, Hettich RL.

Microbiome. 2017 Jul 10;5(1):72. doi: 10.1186/s40168-017-0290-6.


Intrinsic association between diet and the gut microbiome: current evidence.

Winglee K, Fodor AA.

Nutr Diet Suppl. 2015;7:69-76. doi: 10.2147/NDS.S62362. Epub 2015 Oct 7.


Microbial eukaryotes in the human microbiome: ecology, evolution, and future directions.

Parfrey LW, Walters WA, Knight R.

Front Microbiol. 2011 Jul 11;2:153. doi: 10.3389/fmicb.2011.00153. eCollection 2011.


Host Age Affects the Development of Southern Catfish Gut Bacterial Community Divergent From That in the Food and Rearing Water.

Zhang Z, Li D, Refaey MM, Xu W, Tang R, Li L.

Front Microbiol. 2018 Mar 20;9:495. doi: 10.3389/fmicb.2018.00495. eCollection 2018.


Global investigation of composition and interaction networks in gut microbiomes of individuals belonging to diverse geographies and age-groups.

Yadav D, Ghosh TS, Mande SS.

Gut Pathog. 2016 May 6;8:17. doi: 10.1186/s13099-016-0099-z. eCollection 2016.


Relationships between gut microbiota, plasma metabolites, and metabolic syndrome traits in the METSIM cohort.

Org E, Blum Y, Kasela S, Mehrabian M, Kuusisto J, Kangas AJ, Soininen P, Wang Z, Ala-Korpela M, Hazen SL, Laakso M, Lusis AJ.

Genome Biol. 2017 Apr 13;18(1):70. doi: 10.1186/s13059-017-1194-2.


Inferring Intra-Community Microbial Interaction Patterns from Metagenomic Datasets Using Associative Rule Mining Techniques.

Tandon D, Haque MM, Mande SS.

PLoS One. 2016 Apr 28;11(4):e0154493. doi: 10.1371/journal.pone.0154493. eCollection 2016.


Sympatric chimpanzees and gorillas harbor convergent gut microbial communities.

Moeller AH, Peeters M, Ndjango JB, Li Y, Hahn BH, Ochman H.

Genome Res. 2013 Oct;23(10):1715-20. doi: 10.1101/gr.154773.113. Epub 2013 Jun 26.


Factors associated with the diversification of the gut microbial communities within chimpanzees from Gombe National Park.

Degnan PH, Pusey AE, Lonsdorf EV, Goodall J, Wroblewski EE, Wilson ML, Rudicell RS, Hahn BH, Ochman H.

Proc Natl Acad Sci U S A. 2012 Aug 7;109(32):13034-9. doi: 10.1073/pnas.1110994109. Epub 2012 Jul 23.


Meta-analysis of the human gut microbiome from urbanized and pre-agricultural populations.

Mancabelli L, Milani C, Lugli GA, Turroni F, Ferrario C, van Sinderen D, Ventura M.

Environ Microbiol. 2017 Apr;19(4):1379-1390. doi: 10.1111/1462-2920.13692. Epub 2017 Feb 28. Review.


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