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Anaerobic 4-hydroxyproline utilization: Discovery of a new glycyl radical enzyme in the human gut microbiome uncovers a widespread microbial metabolic activity.

Huang YY, Martínez-Del Campo A, Balskus EP.

Gut Microbes. 2018;9(5):437-451. doi: 10.1080/19490976.2018.1435244. Epub 2018 Jun 4.


A prominent glycyl radical enzyme in human gut microbiomes metabolizes trans-4-hydroxy-l-proline.

Levin BJ, Huang YY, Peck SC, Wei Y, Martínez-Del Campo A, Marks JA, Franzosa EA, Huttenhower C, Balskus EP.

Science. 2017 Feb 10;355(6325). pii: eaai8386. doi: 10.1126/science.aai8386.


Characterization of a Novel cis-3-Hydroxy-l-Proline Dehydratase and a trans-3-Hydroxy-l-Proline Dehydratase from Bacteria.

Watanabe S, Fukumori F, Miyazaki M, Tagami S, Watanabe Y.

J Bacteriol. 2017 Jul 25;199(16). pii: e00255-17. doi: 10.1128/JB.00255-17. Print 2017 Aug 15.


Characterization and detection of a widely distributed gene cluster that predicts anaerobic choline utilization by human gut bacteria.

Martínez-del Campo A, Bodea S, Hamer HA, Marks JA, Haiser HJ, Turnbaugh PJ, Balskus EP.

MBio. 2015 Apr 14;6(2). pii: e00042-15. doi: 10.1128/mBio.00042-15.


L-Hydroxyproline and d-Proline Catabolism in Sinorhizobium meliloti.

Chen S, White CE, diCenzo GC, Zhang Y, Stogios PJ, Savchenko A, Finan TM.

J Bacteriol. 2016 Feb 1;198(7):1171-81. doi: 10.1128/JB.00961-15.


An enzymatic method to estimate the content of L-hydroxyproline.

Watanabe S, Hiraoka Y, Endo S, Tanimoto Y, Tozawa Y, Watanabe Y.

J Biotechnol. 2015 Apr 10;199:9-16. doi: 10.1016/j.jbiotec.2015.01.026. Epub 2015 Feb 9.


Feeding strategy shapes gut metagenomic enrichment and functional specialization in captive lemurs.

McKenney EA, O'Connell TM, Rodrigo A, Yoder AD.

Gut Microbes. 2018;9(3):202-217. doi: 10.1080/19490976.2017.1408762. Epub 2018 Mar 27.


Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling.

Lau JT, Whelan FJ, Herath I, Lee CH, Collins SM, Bercik P, Surette MG.

Genome Med. 2016 Jul 1;8(1):72. doi: 10.1186/s13073-016-0327-7.


Alterations of the Gut Microbiome in Hypertension.

Yan Q, Gu Y, Li X, Yang W, Jia L, Chen C, Han X, Huang Y, Zhao L, Li P, Fang Z, Zhou J, Guan X, Ding Y, Wang S, Khan M, Xin Y, Li S, Ma Y.

Front Cell Infect Microbiol. 2017 Aug 24;7:381. doi: 10.3389/fcimb.2017.00381. eCollection 2017.


The role of gut microbiota in fetal methylmercury exposure: Insights from a pilot study.

Rothenberg SE, Keiser S, Ajami NJ, Wong MC, Gesell J, Petrosino JF, Johs A.

Toxicol Lett. 2016 Feb 3;242:60-67. doi: 10.1016/j.toxlet.2015.11.022. Epub 2015 Nov 25.


A unique cis-3-hydroxy-l-proline dehydratase in the enolase superfamily.

Zhang X, Kumar R, Vetting MW, Zhao S, Jacobson MP, Almo SC, Gerlt JA.

J Am Chem Soc. 2015 Feb 4;137(4):1388-91. doi: 10.1021/ja5103986. Epub 2015 Jan 26.


Application of a hierarchical enzyme classification method reveals the role of gut microbiome in human metabolism.

Mohammed A, Guda C.

BMC Genomics. 2015;16 Suppl 7:S16. doi: 10.1186/1471-2164-16-S7-S16. Epub 2015 Jun 11.


[Advances in host-microbe metabolic axis].

Pi Y, Gao K, Zhu W.

Wei Sheng Wu Xue Bao. 2017 Feb 4;57(2):161-9. Review. Chinese.


Functional characterization of aconitase X as a cis-3-hydroxy-L-proline dehydratase.

Watanabe S, Tajima K, Fujii S, Fukumori F, Hara R, Fukuda R, Miyazaki M, Kino K, Watanabe Y.

Sci Rep. 2016 Dec 8;6:38720. doi: 10.1038/srep38720.


Disorder of gut amino acids metabolism during CKD progression is related with gut microbiota dysbiosis and metagenome change.

Liu Y, Li J, Yu J, Wang Y, Lu J, Shang EX, Zhu Z, Guo J, Duan J.

J Pharm Biomed Anal. 2018 Feb 5;149:425-435. doi: 10.1016/j.jpba.2017.11.040. Epub 2017 Nov 15.


Factors influencing the grass carp gut microbiome and its effect on metabolism.

Ni J, Yan Q, Yu Y, Zhang T.

FEMS Microbiol Ecol. 2014 Mar;87(3):704-14. doi: 10.1111/1574-6941.12256. Epub 2013 Dec 11.


A review of metabolic potential of human gut microbiome in human nutrition.

Yadav M, Verma MK, Chauhan NS.

Arch Microbiol. 2018 Mar;200(2):203-217. doi: 10.1007/s00203-017-1459-x. Epub 2017 Nov 29. Review.


Discovering radical-dependent enzymes in the human gut microbiota.

Levin BJ, Balskus EP.

Curr Opin Chem Biol. 2018 Dec;47:86-93. doi: 10.1016/j.cbpa.2018.09.011. Epub 2018 Sep 27. Review.


Specialized metabolites from the microbiome in health and disease.

Sharon G, Garg N, Debelius J, Knight R, Dorrestein PC, Mazmanian SK.

Cell Metab. 2014 Nov 4;20(5):719-730. doi: 10.1016/j.cmet.2014.10.016. Epub 2014 Nov 4.


New glycyl radical enzymes catalysing key metabolic steps in anaerobic bacteria.

Selmer T, Pierik AJ, Heider J.

Biol Chem. 2005 Oct;386(10):981-8. Review.


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