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Items: 1 to 20 of 84

1.

Direct Testing for Allele-Specific Expression Differences Between Conditions.

León-Novelo L, Gerken AR, Graze RM, McIntyre LM, Marroni F.

G3 (Bethesda). 2018 Feb 2;8(2):447-460. doi: 10.1534/g3.117.300139.

2.

Buffering of Genetic Regulatory Networks in Drosophila melanogaster.

Fear JM, León-Novelo LG, Morse AM, Gerken AR, Van Lehmann K, Tower J, Nuzhdin SV, McIntyre LM.

Genetics. 2016 Jul;203(3):1177-90. doi: 10.1534/genetics.116.188797. Epub 2016 May 18.

3.

Allelic imbalance in Drosophila hybrid heads: exons, isoforms, and evolution.

Graze RM, Novelo LL, Amin V, Fear JM, Casella G, Nuzhdin SV, McIntyre LM.

Mol Biol Evol. 2012 Jun;29(6):1521-32. doi: 10.1093/molbev/msr318. Epub 2012 Jan 7.

4.

Genotype-based test in mapping cis-regulatory variants from allele-specific expression data.

Lefebvre JF, Vello E, Ge B, Montgomery SB, Dermitzakis ET, Pastinen T, Labuda D.

PLoS One. 2012;7(6):e38667. doi: 10.1371/journal.pone.0038667. Epub 2012 Jun 7.

5.

A flexible Bayesian method for detecting allelic imbalance in RNA-seq data.

León-Novelo LG, McIntyre LM, Fear JM, Graze RM.

BMC Genomics. 2014 Oct 23;15:920. doi: 10.1186/1471-2164-15-920.

6.

Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster.

Wittkopp PJ, Haerum BK, Clark AG.

Genetics. 2008 Mar;178(3):1831-5. doi: 10.1534/genetics.107.082032. Epub 2008 Feb 3.

7.

A survey of allelic imbalance in F1 mice.

Campbell CD, Kirby A, Nemesh J, Daly MJ, Hirschhorn JN.

Genome Res. 2008 Apr;18(4):555-63. doi: 10.1101/gr.068692.107. Epub 2008 Feb 6.

8.

Computational analysis of whole-genome differential allelic expression data in human.

Wagner JR, Ge B, Pokholok D, Gunderson KL, Pastinen T, Blanchette M.

PLoS Comput Biol. 2010 Jul 8;6(7):e1000849. doi: 10.1371/journal.pcbi.1000849.

9.

Natural variation of gene models in Drosophila melanogaster.

Kurmangaliyev YZ, Favorov AV, Osman NM, Lehmann KV, Campo D, Salomon MP, Tower J, Gelfand MS, Nuzhdin SV.

BMC Genomics. 2015 Mar 17;16:198. doi: 10.1186/s12864-015-1415-6.

10.

Gene expression allelic imbalance in ovine brown adipose tissue impacts energy homeostasis.

Ghazanfar S, Vuocolo T, Morrison JL, Nicholas LM, McMillen IC, Yang JYH, Buckley MJ, Tellam RL.

PLoS One. 2017 Jun 30;12(6):e0180378. doi: 10.1371/journal.pone.0180378. eCollection 2017.

11.

Identification of cis-regulatory variations in the IL6R gene through the inheritance assessment of allelic transcription.

Oh SA, Byun H, Jang E, Jeong S.

Biochim Biophys Acta. 2014 Jan;1840(1):637-44.

PMID:
24482814
12.
13.

Comparison of normalization and differential expression analyses using RNA-Seq data from 726 individual Drosophila melanogaster.

Lin Y, Golovnina K, Chen ZX, Lee HN, Negron YL, Sultana H, Oliver B, Harbison ST.

BMC Genomics. 2016 Jan 5;17:28. doi: 10.1186/s12864-015-2353-z.

14.

Genomic variation and its impact on gene expression in Drosophila melanogaster.

Massouras A, Waszak SM, Albarca-Aguilera M, Hens K, Holcombe W, Ayroles JF, Dermitzakis ET, Stone EA, Jensen JD, Mackay TF, Deplancke B.

PLoS Genet. 2012;8(11):e1003055. doi: 10.1371/journal.pgen.1003055. Epub 2012 Nov 15.

15.

A Variational Bayes Genomic-Enabled Prediction Model with Genotype × Environment Interaction.

Montesinos-López OA, Montesinos-López A, Crossa J, Montesinos-López JC, Luna-Vázquez FJ, Salinas-Ruiz J, Herrera-Morales JR, Buenrostro-Mariscal R.

G3 (Bethesda). 2017 Jun 7;7(6):1833-1853. doi: 10.1534/g3.117.041202.

16.

A robust model-free approach for rare variants association studies incorporating gene-gene and gene-environmental interactions.

Fan R, Lo SH.

PLoS One. 2013 Dec 17;8(12):e83057. doi: 10.1371/journal.pone.0083057. eCollection 2013. Erratum in: PLoS One. 2014;9(5):e98083.

17.

Using Droplet Digital PCR to Analyze Allele-Specific RNA Expression.

Kamitaki N, Usher CL, McCarroll SA.

Methods Mol Biol. 2018;1768:401-422. doi: 10.1007/978-1-4939-7778-9_23.

PMID:
29717456
18.

Powerful identification of cis-regulatory SNPs in human primary monocytes using allele-specific gene expression.

Almlöf JC, Lundmark P, Lundmark A, Ge B, Maouche S, Göring HH, Liljedahl U, Enström C, Brocheton J, Proust C, Godefroy T, Sambrook JG, Jolley J, Crisp-Hihn A, Foad N, Lloyd-Jones H, Stephens J, Gwilliam R, Rice CM, Hengstenberg C, Samani NJ, Erdmann J, Schunkert H, Pastinen T, Deloukas P, Goodall AH, Ouwehand WH, Cambien F, Syvänen AC.

PLoS One. 2012;7(12):e52260. doi: 10.1371/journal.pone.0052260. Epub 2012 Dec 26.

19.

Translating natural genetic variation to gene expression in a computational model of the Drosophila gap gene regulatory network.

Gursky VV, Kozlov KN, Kulakovskiy IV, Zubair A, Marjoram P, Lawrie DS, Nuzhdin SV, Samsonova MG.

PLoS One. 2017 Sep 12;12(9):e0184657. doi: 10.1371/journal.pone.0184657. eCollection 2017.

20.

Detection of cis-acting regulatory SNPs using allelic expression data.

Xiao R, Scott LJ.

Genet Epidemiol. 2011 Sep;35(6):515-25. doi: 10.1002/gepi.20601. Epub 2011 Jul 18.

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