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Items: 1 to 20 of 98

1.

Big data in cryoEM: automated collection, processing and accessibility of EM data.

Baldwin PR, Tan YZ, Eng ET, Rice WJ, Noble AJ, Negro CJ, Cianfrocco MA, Potter CS, Carragher B.

Curr Opin Microbiol. 2018 Jun;43:1-8. doi: 10.1016/j.mib.2017.10.005. Epub 2017 Oct 31. Review.

2.

Automated batch fiducial-less tilt-series alignment in Appion using Protomo.

Noble AJ, Stagg SM.

J Struct Biol. 2015 Nov;192(2):270-8. doi: 10.1016/j.jsb.2015.10.003. Epub 2015 Oct 9.

3.

cryoem-cloud-tools: A software platform to deploy and manage cryo-EM jobs in the cloud.

Cianfrocco MA, Lahiri I, DiMaio F, Leschziner AE.

J Struct Biol. 2018 Sep;203(3):230-235. doi: 10.1016/j.jsb.2018.05.014. Epub 2018 Jun 1.

4.

Asynchronous data acquisition and on-the-fly analysis of dose fractionated cryoEM images by UCSFImage.

Li X, Zheng S, Agard DA, Cheng Y.

J Struct Biol. 2015 Nov;192(2):174-8. doi: 10.1016/j.jsb.2015.09.003. Epub 2015 Sep 11.

5.

Automation in single-particle electron microscopy connecting the pieces.

Lyumkis D, Moeller A, Cheng A, Herold A, Hou E, Irving C, Jacovetty EL, Lau PW, Mulder AM, Pulokas J, Quispe JD, Voss NR, Potter CS, Carragher B.

Methods Enzymol. 2010;483:291-338. doi: 10.1016/S0076-6879(10)83015-0.

PMID:
20888480
6.

Automated data collection in single particle electron microscopy.

Tan YZ, Cheng A, Potter CS, Carragher B.

Microscopy (Oxf). 2016 Feb;65(1):43-56. doi: 10.1093/jmicro/dfv369. Epub 2015 Dec 15. Review.

7.

Processing of Cryo-EM Movie Data.

Ripstein ZA, Rubinstein JL.

Methods Enzymol. 2016;579:103-24. doi: 10.1016/bs.mie.2016.04.009. Epub 2016 Jun 1. Review.

PMID:
27572725
8.

Strategies for Automated CryoEM Data Collection Using Direct Detectors.

Cheng A, Tan YZ, Dandey VP, Potter CS, Carragher B.

Methods Enzymol. 2016;579:87-102. doi: 10.1016/bs.mie.2016.04.008. Epub 2016 Jun 22. Review.

PMID:
27572724
9.

2.8 Å resolution reconstruction of the Thermoplasma acidophilum 20S proteasome using cryo-electron microscopy.

Campbell MG, Veesler D, Cheng A, Potter CS, Carragher B.

Elife. 2015 Mar 11;4. doi: 10.7554/eLife.06380.

10.

Cryogenic electron microscopy and single-particle analysis.

Elmlund D, Elmlund H.

Annu Rev Biochem. 2015;84:499-517. doi: 10.1146/annurev-biochem-060614-034226. Epub 2015 Feb 26. Review.

PMID:
25747402
11.

Workshop on the validation and modeling of electron cryo-microscopy structures of biological nanomachines.

Ludtke SJ, Lawson CL, Kleywegt GJ, Berman HM, Chiu W.

Pac Symp Biocomput. 2011:369-73.

13.

New tools for automated high-resolution cryo-EM structure determination in RELION-3.

Zivanov J, Nakane T, Forsberg BO, Kimanius D, Hagen WJ, Lindahl E, Scheres SH.

Elife. 2018 Nov 9;7. pii: e42166. doi: 10.7554/eLife.42166.

14.

Focus: The interface between data collection and data processing in cryo-EM.

Biyani N, Righetto RD, McLeod R, Caujolle-Bert D, Castano-Diez D, Goldie KN, Stahlberg H.

J Struct Biol. 2017 May;198(2):124-133. doi: 10.1016/j.jsb.2017.03.007. Epub 2017 Mar 23.

15.

A novel storage system for cryoEM samples.

Scapin G, Prosise WW, Wismer MK, Strickland C.

J Struct Biol. 2017 Jul;199(1):84-86. doi: 10.1016/j.jsb.2017.04.005. Epub 2017 Apr 19.

16.

Advances in cryo-electron tomography for biology and medicine.

Koning RI, Koster AJ, Sharp TH.

Ann Anat. 2018 May;217:82-96. doi: 10.1016/j.aanat.2018.02.004. Epub 2018 Mar 8. Review.

17.

High-resolution cryo-electron microscopy on macromolecular complexes and cell organelles.

Hoenger A.

Protoplasma. 2014 Mar;251(2):417-27. doi: 10.1007/s00709-013-0600-1. Epub 2014 Jan 5. Review.

18.

Single-particle cryo-EM data acquisition by using direct electron detection camera.

Wu S, Armache JP, Cheng Y.

Microscopy (Oxf). 2016 Feb;65(1):35-41. doi: 10.1093/jmicro/dfv355. Epub 2015 Nov 6. Review.

19.

CryoEM-based hybrid modeling approaches for structure determination.

Cassidy CK, Himes BA, Luthey-Schulten Z, Zhang P.

Curr Opin Microbiol. 2018 Jun;43:14-23. doi: 10.1016/j.mib.2017.10.002. Epub 2017 Nov 4. Review.

20.

Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta.

Wang RY, Song Y, Barad BA, Cheng Y, Fraser JS, DiMaio F.

Elife. 2016 Sep 26;5. pii: e17219. doi: 10.7554/eLife.17219.

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