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PCR and Omics Based Techniques to Study the Diversity, Ecology and Biology of Anaerobic Fungi: Insights, Challenges and Opportunities.

Edwards JE, Forster RJ, Callaghan TM, Dollhofer V, Dagar SS, Cheng Y, Chang J, Kittelmann S, Fliegerova K, Puniya AK, Henske JK, Gilmore SP, O'Malley MA, Griffith GW, Smidt H.

Front Microbiol. 2017 Sep 25;8:1657. doi: 10.3389/fmicb.2017.01657. eCollection 2017. Review.


Anaerobic fungi (phylum Neocallimastigomycota): advances in understanding their taxonomy, life cycle, ecology, role and biotechnological potential.

Gruninger RJ, Puniya AK, Callaghan TM, Edwards JE, Youssef N, Dagar SS, Fliegerova K, Griffith GW, Forster R, Tsang A, McAllister T, Elshahed MS.

FEMS Microbiol Ecol. 2014 Oct;90(1):1-17. doi: 10.1111/1574-6941.12383. Epub 2014 Aug 11. Review.


Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores.

Liggenstoffer AS, Youssef NH, Couger MB, Elshahed MS.

ISME J. 2010 Oct;4(10):1225-35. doi: 10.1038/ismej.2010.49. Epub 2010 Apr 22.


Internal transcribed spacer 1 secondary structure analysis reveals a common core throughout the anaerobic fungi (Neocallimastigomycota).

Koetschan C, Kittelmann S, Lu J, Al-Halbouni D, Jarvis GN, Müller T, Wolf M, Janssen PH.

PLoS One. 2014 Mar 24;9(3):e91928. doi: 10.1371/journal.pone.0091928. eCollection 2014.


A proposed taxonomy of anaerobic fungi (class neocallimastigomycetes) suitable for large-scale sequence-based community structure analysis.

Kittelmann S, Naylor GE, Koolaard JP, Janssen PH.

PLoS One. 2012;7(5):e36866. doi: 10.1371/journal.pone.0036866. Epub 2012 May 16.


The biotechnological potential of anaerobic fungi on fiber degradation and methane production.

Cheng Y, Shi Q, Sun R, Liang D, Li Y, Li Y, Jin W, Zhu W.

World J Microbiol Biotechnol. 2018 Oct 1;34(10):155. doi: 10.1007/s11274-018-2539-z. Review.


Phylogeny of anaerobic fungi (phylum Neocallimastigomycota), with contributions from yak in China.

Wang X, Liu X, Groenewald JZ.

Antonie Van Leeuwenhoek. 2017 Jan;110(1):87-103. doi: 10.1007/s10482-016-0779-1. Epub 2016 Oct 12.


Anaerobic fungi: Neocallimastigomycota.

Griffith GW, Baker S, Fliegerova K, Liggenstoffer A, van der Giezen M, Voigt K, Beakes G.

IMA Fungus. 2010 Dec;1(2):181-5. Epub 2010 Nov 23.


Horizontal gene transfer as an indispensable driver for Neocallimastigomycota evolution into a distinct gut-dwelling fungal lineage.

Murphy CL, Youssef NH, Hanafy RA, Couger MB, Stajich JE, Wang Y, Baker K, Dagar SS, Griffith GW, Farag IF, Callaghan TM, Elshahed MS.

Appl Environ Microbiol. 2019 May 24. pii: AEM.00988-19. doi: 10.1128/AEM.00988-19. [Epub ahead of print]


Finding a robust strain for biomethanation: anaerobic fungi (Neocallimastigomycota) from the Alpine ibex (Capra ibex) and their associated methanogens.

Leis S, Dresch P, Peintner U, Fliegerová K, Sandbichler AM, Insam H, Podmirseg SM.

Anaerobe. 2014 Oct;29:34-43. doi: 10.1016/j.anaerobe.2013.12.002. Epub 2013 Dec 30.


Pecoramyces ruminantium, gen. nov., sp. nov., an anaerobic gut fungus from the feces of cattle and sheep.

Hanafy RA, Elshahed MS, Liggenstoffer AS, Griffith GW, Youssef NH.

Mycologia. 2017;109(2):231-243. doi: 10.1080/00275514.2017.1317190. Epub 2017 Apr 18.


Hydrolysis of untreated lignocellulosic feedstock is independent of S-lignin composition in newly classified anaerobic fungal isolate, Piromyces sp. UH3-1.

Hooker CA, Hillman ET, Overton JC, Ortiz-Velez A, Schacht M, Hunnicutt A, Mosier NS, Solomon KV.

Biotechnol Biofuels. 2018 Oct 27;11:293. doi: 10.1186/s13068-018-1292-8. eCollection 2018.


Real-time PCR assays for monitoring anaerobic fungal biomass and population size in the rumen.

Lwin KO, Hayakawa M, Ban-Tokuda T, Matsui H.

Curr Microbiol. 2011 Apr;62(4):1147-51. doi: 10.1007/s00284-010-9843-7. Epub 2010 Dec 14.


Feramyces austinii, gen. nov., sp. nov., an anaerobic gut fungus from rumen and fecal samples of wild Barbary sheep and fallow deer.

Hanafy RA, Elshahed MS, Youssef NH.

Mycologia. 2018 May-Jun;110(3):513-525. doi: 10.1080/00275514.2018.1466610. Epub 2018 Jul 3.


Insect pathogens as biological control agents: Back to the future.

Lacey LA, Grzywacz D, Shapiro-Ilan DI, Frutos R, Brownbridge M, Goettel MS.

J Invertebr Pathol. 2015 Nov;132:1-41. doi: 10.1016/j.jip.2015.07.009. Epub 2015 Jul 27. Review.


Methods for Genomic Characterization and Maintenance of Anaerobic Fungi.

Peng X, Swift CL, Theodorou MK, O'Malley MA.

Methods Mol Biol. 2018;1775:53-67. doi: 10.1007/978-1-4939-7804-5_5.


Transcriptomic analysis of lignocellulosic biomass degradation by the anaerobic fungal isolate Orpinomyces sp. strain C1A.

Couger MB, Youssef NH, Struchtemeyer CG, Liggenstoffer AS, Elshahed MS.

Biotechnol Biofuels. 2015 Dec 8;8:208. doi: 10.1186/s13068-015-0390-0. eCollection 2015.


Green systems biology - From single genomes, proteomes and metabolomes to ecosystems research and biotechnology.

Weckwerth W.

J Proteomics. 2011 Dec 10;75(1):284-305. doi: 10.1016/j.jprot.2011.07.010. Epub 2011 Jul 23. Review.


The use of extracellular DNA as a proxy for specific microbial activity.

Nagler M, Podmirseg SM, Griffith GW, Insam H, Ascher-Jenull J.

Appl Microbiol Biotechnol. 2018 Mar;102(6):2885-2898. doi: 10.1007/s00253-018-8786-y. Epub 2018 Feb 8.


Liebetanzomycespolymorphus gen. et sp. nov., a new anaerobic fungus (Neocallimastigomycota) isolated from the rumen of a goat.

Joshi A, Lanjekar VB, Dhakephalkar PK, Callaghan TM, Griffith GW, Dagar SS.

MycoKeys. 2018 Oct 10;(40):89-110. doi: 10.3897/mycokeys.40.28337. eCollection 2018.

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