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Items: 1 to 20 of 101

1.

Combinatorial control of gene expression in Aspergillus niger grown on sugar beet pectin.

Kowalczyk JE, Lubbers RJM, Peng M, Battaglia E, Visser J, de Vries RP.

Sci Rep. 2017 Sep 27;7(1):12356. doi: 10.1038/s41598-017-12362-y.

2.

The transcriptional activator GaaR of Aspergillus niger is required for release and utilization of d-galacturonic acid from pectin.

Alazi E, Niu J, Kowalczyk JE, Peng M, Aguilar Pontes MV, van Kan JA, Visser J, de Vries RP, Ram AF.

FEBS Lett. 2016 Jun;590(12):1804-15. doi: 10.1002/1873-3468.12211. Epub 2016 May 30.

3.

Aspergillus niger RhaR, a regulator involved in L-rhamnose release and catabolism.

Gruben BS, Zhou M, Wiebenga A, Ballering J, Overkamp KM, Punt PJ, de Vries RP.

Appl Microbiol Biotechnol. 2014 Jun;98(12):5531-40. doi: 10.1007/s00253-014-5607-9. Epub 2014 Feb 28.

PMID:
24682478
4.

Identification of a Novel L-rhamnose Uptake Transporter in the Filamentous Fungus Aspergillus niger.

Sloothaak J, Odoni DI, Martins Dos Santos VA, Schaap PJ, Tamayo-Ramos JA.

PLoS Genet. 2016 Dec 16;12(12):e1006468. doi: 10.1371/journal.pgen.1006468. eCollection 2016 Dec.

5.

Assessment of the pectin degrading enzyme network of Aspergillus niger by functional genomics.

Martens-Uzunova ES, Schaap PJ.

Fungal Genet Biol. 2009 Mar;46 Suppl 1:S170-S179.

PMID:
19618506
6.

The influence of Aspergillus niger transcription factors AraR and XlnR in the gene expression during growth in D-xylose, L-arabinose and steam-exploded sugarcane bagasse.

de Souza WR, Maitan-Alfenas GP, de Gouvêa PF, Brown NA, Savoldi M, Battaglia E, Goldman MH, de Vries RP, Goldman GH.

Fungal Genet Biol. 2013 Nov;60:29-45. doi: 10.1016/j.fgb.2013.07.007. Epub 2013 Jul 26.

7.

Expression profiling of pectinolytic genes from Aspergillus niger.

de Vries RP, Jansen J, Aguilar G, Parenicová L, Joosten V, Wülfert F, Benen JA, Visser J.

FEBS Lett. 2002 Oct 23;530(1-3):41-7.

8.

Expression-based clustering of CAZyme-encoding genes of Aspergillus niger.

Gruben BS, Mäkelä MR, Kowalczyk JE, Zhou M, Benoit-Gelber I, De Vries RP.

BMC Genomics. 2017 Nov 23;18(1):900. doi: 10.1186/s12864-017-4164-x.

9.

High resolution visualization and exo-proteomics reveal the physiological role of XlnR and AraR in plant biomass colonization and degradation by Aspergillus niger.

Kowalczyk JE, Khosravi C, Purvine S, Dohnalkova A, Chrisler WB, Orr G, Robinson E, Zink E, Wiebenga A, Peng M, Battaglia E, Baker S, de Vries RP.

Environ Microbiol. 2017 Nov;19(11):4587-4598. doi: 10.1111/1462-2920.13923. Epub 2017 Oct 20.

PMID:
29027734
10.

An Evolutionarily Conserved Transcriptional Activator-Repressor Module Controls Expression of Genes for D-Galacturonic Acid Utilization in Aspergillus niger.

Niu J, Alazi E, Reid ID, Arentshorst M, Punt PJ, Visser J, Tsang A, Ram AF.

Genetics. 2017 Jan;205(1):169-183. doi: 10.1534/genetics.116.194050. Epub 2016 Nov 9.

11.

Regulation of pentose utilisation by AraR, but not XlnR, differs in Aspergillus nidulans and Aspergillus niger.

Battaglia E, Hansen SF, Leendertse A, Madrid S, Mulder H, Nikolaev I, de Vries RP.

Appl Microbiol Biotechnol. 2011 Jul;91(2):387-97. doi: 10.1007/s00253-011-3242-2. Epub 2011 Apr 12.

12.
13.

In vivo functional analysis of L-rhamnose metabolic pathway in Aspergillus niger: a tool to identify the potential inducer of RhaR.

Khosravi C, Kun RS, Visser J, Aguilar-Pontes MV, de Vries RP, Battaglia E.

BMC Microbiol. 2017 Nov 6;17(1):214. doi: 10.1186/s12866-017-1118-z.

14.

Inducer-independent production of pectinases in Aspergillus niger by overexpression of the D-galacturonic acid-responsive transcription factor gaaR.

Alazi E, Knetsch T, Di Falco M, Reid ID, Arentshorst M, Visser J, Tsang A, Ram AFJ.

Appl Microbiol Biotechnol. 2018 Mar;102(6):2723-2736. doi: 10.1007/s00253-018-8753-7. Epub 2018 Jan 24.

15.

Genetic Interaction of Aspergillus nidulans galR, xlnR and araR in Regulating D-Galactose and L-Arabinose Release and Catabolism Gene Expression.

Kowalczyk JE, Gruben BS, Battaglia E, Wiebenga A, Majoor E, de Vries RP.

PLoS One. 2015 Nov 18;10(11):e0143200. doi: 10.1371/journal.pone.0143200. eCollection 2015.

16.

A new group of exo-acting family 28 glycoside hydrolases of Aspergillus niger that are involved in pectin degradation.

Martens-Uzunova ES, Zandleven JS, Benen JA, Awad H, Kools HJ, Beldman G, Voragen AG, Van den Berg JA, Schaap PJ.

Biochem J. 2006 Nov 15;400(1):43-52.

17.

The transcriptional activators AraR and XlnR from Aspergillus niger regulate expression of pentose catabolic and pentose phosphate pathway genes.

Battaglia E, Zhou M, de Vries RP.

Res Microbiol. 2014 Sep;165(7):531-40. doi: 10.1016/j.resmic.2014.07.013. Epub 2014 Jul 31.

PMID:
25086261
18.

Metabolic engineering of the fungal D-galacturonate pathway for L-ascorbic acid production.

Kuivanen J, Penttilä M, Richard P.

Microb Cell Fact. 2015 Jan 8;14:2. doi: 10.1186/s12934-014-0184-2.

19.

The interaction of induction and repression mechanisms in the regulation of galacturonic acid-induced genes in Aspergillus niger.

Niu J, Homan TG, Arentshorst M, de Vries RP, Visser J, Ram AF.

Fungal Genet Biol. 2015 Sep;82:32-42. doi: 10.1016/j.fgb.2015.06.006. Epub 2015 Jun 27.

PMID:
26127014
20.

Cloning and characterization of two rhamnogalacturonan hydrolase genes from Aspergillus niger.

Suykerbuyk ME, Kester HC, Schaap PJ, Stam H, Musters W, Visser J.

Appl Environ Microbiol. 1997 Jul;63(7):2507-15.

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