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Items: 1 to 20 of 90

1.

Metabolite toxicity slows local diversity loss during expansion of a microbial cross-feeding community.

Goldschmidt F, Regoes RR, Johnson DR.

ISME J. 2018 Jan;12(1):136-144. doi: 10.1038/ismej.2017.147. Epub 2017 Sep 15.

2.

Substrate cross-feeding affects the speed and trajectory of molecular evolution within a synthetic microbial assemblage.

Lilja EE, Johnson DR.

BMC Evol Biol. 2019 Jun 20;19(1):129. doi: 10.1186/s12862-019-1458-4.

3.

Metabolite toxicity determines the pace of molecular evolution within microbial populations.

Lilja EE, Johnson DR.

BMC Evol Biol. 2017 Feb 14;17(1):52. doi: 10.1186/s12862-017-0906-2.

4.

Segregating metabolic processes into different microbial cells accelerates the consumption of inhibitory substrates.

Lilja EE, Johnson DR.

ISME J. 2016 Jul;10(7):1568-78. doi: 10.1038/ismej.2015.243. Epub 2016 Jan 15.

5.

Emergence of microbial diversity due to cross-feeding interactions in a spatial model of gut microbial metabolism.

Hoek MJAV, Merks RMH.

BMC Syst Biol. 2017 May 16;11(1):56. doi: 10.1186/s12918-017-0430-4.

6.

Toxicity of TiO₂ nanoparticle to denitrifying strain CFY1 and the impact on microbial community structures in activated sludge.

Li D, Li B, Wang Q, Hou N, Li C, Cheng X.

Chemosphere. 2016 Feb;144:1334-41. doi: 10.1016/j.chemosphere.2015.10.002. Epub 2015 Oct 23.

PMID:
26479452
7.

Decline of soil microbial diversity does not influence the resistance and resilience of key soil microbial functional groups following a model disturbance.

Wertz S, Degrange V, Prosser JI, Poly F, Commeaux C, Guillaumaud N, Le Roux X.

Environ Microbiol. 2007 Sep;9(9):2211-9.

PMID:
17686019
8.

Initial community evenness favours functionality under selective stress.

Wittebolle L, Marzorati M, Clement L, Balloi A, Daffonchio D, Heylen K, De Vos P, Verstraete W, Boon N.

Nature. 2009 Apr 2;458(7238):623-6. doi: 10.1038/nature07840. Epub 2009 Mar 8.

PMID:
19270679
9.

Microbial dynamics of model Fabriano-like fermented sausages as affected by starter cultures, nitrates and nitrites.

Cardinali F, Milanović V, Osimani A, Aquilanti L, Taccari M, Garofalo C, Polverigiani S, Clementi F, Franciosi E, Tuohy K, Mercuri ML, Altissimi MS, Haouet MN.

Int J Food Microbiol. 2018 Aug 2;278:61-72. doi: 10.1016/j.ijfoodmicro.2018.04.032. Epub 2018 Apr 21.

PMID:
29702317
10.

Growth yields in bacterial denitrification and nitrate ammonification.

Strohm TO, Griffin B, Zumft WG, Schink B.

Appl Environ Microbiol. 2007 Mar;73(5):1420-4. Epub 2007 Jan 5.

11.

Denitrification by the mix-culturing of fungi and bacteria with shell.

Liu D, Zhang S, Zheng Y, Shoun H.

Microbiol Res. 2006;161(2):132-7. Epub 2005 Aug 26.

12.

Pervasive Selection for Cooperative Cross-Feeding in Bacterial Communities.

Germerodt S, Bohl K, Lück A, Pande S, Schröter A, Kaleta C, Schuster S, Kost C.

PLoS Comput Biol. 2016 Jun 17;12(6):e1004986. doi: 10.1371/journal.pcbi.1004986. eCollection 2016 Jun.

13.

Bacterial diversity stabilizes community productivity.

Eisenhauer N, Scheu S, Jousset A.

PLoS One. 2012;7(3):e34517. doi: 10.1371/journal.pone.0034517. Epub 2012 Mar 28.

14.

Effect of carbon source, C/N ratio, nitrate and dissolved oxygen concentration on nitrite and ammonium production from denitrification process by Pseudomonas stutzeri D6.

Yang X, Wang S, Zhou L.

Bioresour Technol. 2012 Jan;104:65-72. doi: 10.1016/j.biortech.2011.10.026. Epub 2011 Oct 19.

PMID:
22074905
15.

Genome-scale reconstruction of the metabolic network in Pseudomonas stutzeri A1501.

Babaei P, Marashi SA, Asad S.

Mol Biosyst. 2015 Nov;11(11):3022-32. doi: 10.1039/c5mb00086f.

PMID:
26302703
16.

Nitrate respiration in Pseudomonas stutzeri A15 and its involvement in rice and wheat root colonization.

Rediers H, Vanderleyden J, De Mot R.

Microbiol Res. 2009;164(4):461-8. Epub 2007 Apr 30.

17.

Measuring biodiversity to explain community assembly: a unified approach.

Pavoine S, Bonsall MB.

Biol Rev Camb Philos Soc. 2011 Nov;86(4):792-812. doi: 10.1111/j.1469-185X.2010.00171.x. Epub 2010 Dec 14. Review.

PMID:
21155964
18.

Elevational gradients in β-diversity reflect variation in the strength of local community assembly mechanisms across spatial scales.

Tello JS, Myers JA, Macía MJ, Fuentes AF, Cayola L, Arellano G, Loza MI, Torrez V, Cornejo M, Miranda TB, Jørgensen PM.

PLoS One. 2015 Mar 24;10(3):e0121458. doi: 10.1371/journal.pone.0121458. eCollection 2015.

19.

Regulation of dissolved oxygen from accumulated nitrite during the heterotrophic nitrification and aerobic denitrification of Pseudomonas stutzeri T13.

Sun Y, Li A, Zhang X, Ma F.

Appl Microbiol Biotechnol. 2015 Apr;99(7):3243-8. doi: 10.1007/s00253-014-6221-6. Epub 2014 Nov 25.

PMID:
25417744
20.

Anaerobic degradation of long-chain alkylamines by a denitrifying Pseudomonas stutzeri.

Nguyen PD, van Ginkel CG, Plugge CM.

FEMS Microbiol Ecol. 2008 Oct;66(1):136-42. doi: 10.1111/j.1574-6941.2008.00564.x. Epub 2008 Aug 21.

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